Browse Element(s) Details


Os.51708.1.S1_at

Description gb:AK063487.1
DB_XREF= gi:32973505
TID=Os.51708.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51708 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-116-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-C06, full insert sequence.
FL= gb:AK063487.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5282010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52780Os.50342.1.S1_at11/114+31201743..31206034Leucine Rich Repeat family protein, expressed
LOC_Os04g52790OsAffx.26579.1.S1_at11/114+31213376..31213894hypothetical protein
LOC_Os04g52800OsAffx.14383.1.S1_at11/114+31215878..31216897hypothetical protein
LOC_Os04g52810OsAffx.4160.1.S1_at11/114+31220876..31224278No apical meristem protein, expressed
LOC_Os04g52820OsAffx.26580.1.S1_at11/114+31229488..31233456hypothetical protein
LOC_Os04g52820Os.57094.1.S1_at11/114+31229488..31233456hypothetical protein
LOC_Os04g52820Os.51708.1.S1_at10/114+31229488..31233456hypothetical protein
LOC_Os04g52830Os.4693.1.S1_at11/114+31239893..31242955kelch repeat-containing F-box family protein, putative, expressed
LOC_Os04g52830OsAffx.18753.3.S1_x_at1/114+31239893..31242955kelch repeat-containing F-box family protein, putative, expressed
LOC_Os04g52840Os.4555.1.S1_at11/114+31244047..31247345Protein kinase domain containing protein, expressed
LOC_Os04g52850Os.19751.1.S1_at11/114+31255319..31258257OTU-like cysteine protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51708.1.S1_at--1030--3211NONE
CAAGTGGTGACTGACGGAGGCATTT
NONE
Os.51708.1.S1_at--398--9671Chr04:31232375..31232399 (25 bp)
TCACCAAGTAAGATGCAGCAGACAA
LOC_Os04g52820
Os.51708.1.S1_at--344--6331Chr04:31232386..31232410 (25 bp)
GATGCAGCAGACAAGATGCCTGAAT
LOC_Os04g52820
Os.51708.1.S1_at--47--2231Chr04:31232396..31232420 (25 bp)
ACAAGATGCCTGAATGTAAACCAAG
LOC_Os04g52820
Os.51708.1.S1_at--710--8151Chr04:31232420..31232444 (25 bp)
GGAAATGATATCCTCTCACTCGCTT
LOC_Os04g52820
Os.51708.1.S1_at--57--9691Chr04:31232435..31232459 (25 bp)
TCACTCGCTTTCAATGTCTGCAAAA
LOC_Os04g52820
Os.51708.1.S1_at--240--2031Chr04:31232487..31232511 (25 bp)
ACACCATACCTTGTTAAGTCAAGTG
LOC_Os04g52820
Os.51708.1.S1_at--695--1191Chr04:31233201..31233225 (25 bp)
AGTAGTAGCTTTCTAGCGCATCTGC
LOC_Os04g52820
Os.51708.1.S1_at--355--4891Chr04:31233208..31233232 (25 bp)
GCTTTCTAGCGCATCTGCTGCTGCA
LOC_Os04g52820
Os.51708.1.S1_at--600--1411Chr04:31233314..31233338 (25 bp)
AGAAAAAATTCACTCCAAGCTGATC
LOC_Os04g52820
Os.51708.1.S1_at--1032--4731Chr04:31233332..31233356 (25 bp)
GCTGATCAACTGACACAGGTGGTGA
LOC_Os04g52820
Target Sequence 
CAAGTGGTGACTGACGGAGGCATTTGTCACCAAGTAAGATGCAGCAGACAAGATGCCTGAATGTAAACCAAGGAAATGAT
ATCCTCTCACTCGCTTTCAATGTCTGCAAAAAAAGATGAGAGCTCAAGCTCTCAGCAAAACACCATACCTTGTTAAGTCA
AGTGGCAATGCAAAATGAAGGCTAGCAAGTGACGCCAACGCCAGTGGCCTCTCTGTGGTGGAGAAAGAGCATCCTAGGAG
TCTGACGCCCATGCTATGGGCCAAAAAGGTCGAGCACTTTTCCGAACATCAAACGAAGCGCCCATGCTGGGAGCAATGCC
TCCGCCACCTTCAAAGGGACCGAAGAACTGAACCTGCAGTGGACTTAACTGTGAGTAAGAATTCAGTGGTAGTAGTAGCT
TTCTAGCGCATCTGCTGCTGCAGGTTTGGAGCAGATTTCGAGCCCTCACCGACAGCAACGACAGGGCCAGGTACCAACGG
CACATGACATGTAAAAAAACCTGAGAAAAAATTCACTCCAAGCTGATCAACTGACACAGGTGGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51708.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis