Browse Element(s) Details


Os.51733.1.S1_x_at

Description gb:AK063562.1
DB_XREF= gi:32973580
TID=Os.51733.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51733 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-117-F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-F04, full insert sequence.
FL= gb:AK063562.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1664011/11expressed protein
LOC_Os05g079807/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g16600OsAffx.22947.2.S1_x_at8/115+9388858..9393435retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g16600OsAffx.22947.1.S1_x_at7/115+9388858..9393435retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g16600OsAffx.22947.3.S1_x_at5/115+9388858..9393435retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g16600OsAffx.22947.5.S1_x_at1/115+9388858..9393435retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g16610NANA5+9396669..9397868transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g16620Os.56292.1.S1_x_at1/115+9399028..9403076transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g16630Os.10825.1.S1_at8/115+9411679..9415435UPF0071 protein, putative, expressed
LOC_Os05g16640OsAffx.26779.2.S1_at11/115+9418028..9422983expressed protein
LOC_Os05g16640Os.51733.1.S1_x_at11/115+9418028..9422983expressed protein
LOC_Os05g16640OsAffx.26779.1.S1_x_at2/115+9418028..9422983expressed protein
LOC_Os05g16640Os.50315.2.A1_at1/115+9418028..9422983expressed protein
LOC_Os05g16660Os.48078.1.S1_at11/115+9428102..9433771Eukaryotic translation initiation factor 3 subunit 2, putative, expressed
LOC_Os05g16670Os.26806.1.S1_at8/115+9444846..9453161SHR5-receptor-like kinase, putative, expressed
LOC_Os05g16670Os.2550.1.S1_at1/115+9444846..9453161SHR5-receptor-like kinase, putative, expressed
LOC_Os05g16670OsAffx.29133.1.S1_x_at1/115+9444846..9453161SHR5-receptor-like kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51733.1.S1_x_at--336--2371Chr05:9420468..9420492 (25 bp)
AAACTCGGTTTGTACGTGCCGCAGA
LOC_Os05g16640
Os.51733.1.S1_x_at--30--9792Chr05:9420553..9420683 (25 bp)
TAAGATTCCAGGTTCTCCAGGCAAG
LOC_Os05g16640
Os.51733.1.S1_x_at--1091--2051Chr05:9420710..9420734 (25 bp)
ACTTCGAGTCTGCTGCAATCGTGAG
LOC_Os05g16640
Os.51733.1.S1_x_at--1021--1232Chr05:9420855..9420879 (25 bp)
AGTTGTCACTTGGAAGCGTTCTGTA
LOC_Os05g16640
Os.51733.1.S1_x_at--322--10172Chr05:9420878..9420902 (25 bp)
TATCATCTTTGTCCTCATCATCTAA
LOC_Os05g16640
Os.51733.1.S1_x_at--472--2792Chr05:9420901..9420925 (25 bp)
AAGAGTCCACTTACAGCAGCAATGA
LOC_Os05g16640
Os.51733.1.S1_x_at--740--8811Chr05:9420960..9420984 (25 bp)
TGTTGAGCAATTCGCCATGGTATCT
LOC_Os05g16640
Os.51733.1.S1_x_at--891--812Chr05:9420976..9421000 (25 bp)
ATGGTATCTGGAAGCCACTCGTCTA
LOC_Os05g16640
Os.51733.1.S1_x_at--103--8411Chr05:9421512..9421536 (25 bp)
GGCGCCAATTTGCACGAGGTCTAAA
LOC_Os05g16640
Os.51733.1.S1_x_at--527--5312Chr05:9421570..9421594 (25 bp)
GAAGGATCTTCATTCCAGGGTGTCT
LOC_Os05g16640
Os.51733.1.S1_x_at--580--3472Chr05:9421585..9421609 (25 bp)
CAGGGTGTCTGTTGCGATCCAGGCT
LOC_Os05g16640
Target Sequence 
AAACTCGGTTTGTACGTGCCGCAGAAGCTGGGAATGAGGTTTCCAGAATGCTTGAGACAAAGAAGATCAGACTTGATATA
TGTGCTAAGATTCCAGGTTCTCCAGGCAAGCCACCTACTGCCCGATTTGTGTCCGCACTTCGAGTCTGCTGCAATCGTGA
GAATATTCTCAACCAGGAAACTGCACAGAATATCTCAAAAGTTGTCACTTGGAAGCGTTCTGTATCATCTTTGTCCTCAT
CATCTAAGAGTCCACTTACAGCAGCAATGATTACTGATGATGTGGGTGATAGTAACAGTGATTTTGTTGAGCAATTCGCC
ATGGTATCTGGAAGCCACTCGTCTACCTTGGATAGGTTACATGCTTGGGAGAGAAAACTACATGATGAAATCAAGGCTAG
TGAACATGTTAGAAAGACTTATGATGAGAAATGTAACCTTCTCCGGCGCCAATTTGCACGAGGTCTAAATGCTCAACTGA
TTGATAAGACCAGAGCTGTTGTGAAGGATCTTCATTCCAGGGTGTCTGTTGCGATCCAGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51733.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis