Browse Element(s) Details


Os.5174.1.S1_at

Description gb:BI813803
DB_XREF= gi:16579708
DB_XREF=P002E08
CLONE=P002E08
TID=Os.5174.1
CNT=11
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.5174 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative 4-coumarate-CoA ligase (P0035F12.17), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6753011/11AMP-binding enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67510Os.18205.1.S1_at10/111+39565700..39570792Protein recA, putative, expressed
LOC_Os01g67520Os.49594.1.S1_at11/111+39571459..39573977VTC2, putative, expressed
LOC_Os01g67530Os.5174.1.S1_at11/111+39579852..39583588AMP-binding enzyme family protein, expressed
LOC_Os01g67540OsAffx.21790.1.S1_at11/111+39584856..39588099AMP-binding enzyme family protein, expressed
LOC_Os01g67550Os.54247.1.S1_at6/111+39589761..39593236FAD binding domain containing protein
LOC_Os01g67560Os.14630.1.S1_at11/111+39593630..39596178Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os01g67560Os.14630.2.S1_at11/111+39593630..39596178Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os01g67570Os.14855.1.S1_at11/111+39597394..39601841expressed protein
LOC_Os01g67580Os.33212.2.S1_at11/111+39603067..39609733ABC transporter family protein, expressed
LOC_Os01g67580Os.50194.1.S1_at1/111+39603067..39609733ABC transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009698biological_processphenylpropanoid metabolism
GO:0005777cellular_componentperoxisome
GO:0004321molecular_functionfatty-acyl-CoA synthase activity
GO:0016207molecular_function4-coumarate-CoA ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5174.1.S1_at--986--7871Chr01:39582317..39582341 (25 bp)
GGTTTTCTATACATCGTTGATCGAC
LOC_Os01g67530
Os.5174.1.S1_at--908--3191Chr01:39582361..39582499 (25 bp)
CAAGGGATACCAGGTACCTCCAGCA
LOC_Os01g67530
Os.5174.1.S1_at--71--5471Chr01:39582500..39582524 (25 bp)
GAACTGGAGCATATTCTGCAGTCCC
LOC_Os01g67530
Os.5174.1.S1_at--952--7611Chr01:39582665..39582689 (25 bp)
GGGAACTACCAATGGCTTTCATAGT
LOC_Os01g67530
Os.5174.1.S1_at--630--4091Chr01:39583227..39583251 (25 bp)
CGACGAGTGGCTTTTGTCACTGCAA
LOC_Os01g67530
Os.5174.1.S1_at--1043--7091Chr01:39583242..39583266 (25 bp)
GTCACTGCAATACCAAAATCGCCTG
LOC_Os01g67530
Os.5174.1.S1_at--1005--6251Chr01:39583310..39583334 (25 bp)
GATGGGTGCCTCCAAGCTTTGAAAT
LOC_Os01g67530
Os.5174.1.S1_at--707--9751Chr01:39583338..39583362 (25 bp)
TAATTTGCTGCAGTAGTCTAGTAGA
LOC_Os01g67530
Os.5174.1.S1_at--743--10351Chr01:39583395..39583419 (25 bp)
TTTATAGGCCTCAAGCTTTACCAAT
LOC_Os01g67530
Os.5174.1.S1_at--963--4851Chr01:39583409..39583433 (25 bp)
GCTTTACCAATTAACACCTCCTTTG
LOC_Os01g67530
Os.5174.1.S1_at--1152--10111Chr01:39583478..39583502 (25 bp)
TATGTAAATTCCCATGTTCCAGAGC
LOC_Os01g67530
Target Sequence 
GGTTTTCTATACATCGTTGATCGACTGAAGGAGTTGATAAAGTACAAGGGATACCAGGTACCTCCAGCAGAACTGGAGCA
TATTCTGCAGTCCCNATCCTGGNAATNCGCTGATGCGNCAGTTATCCCATATCCAGATGAAGAAGCTGGGGAACTACCAA
TGGCTTTCATAGTAAGGCAACCAGGTTCAAATATTACCAAGGAACAAGTCATGGATTATGTCGCAAANCAGGTTGCGCCA
TACAAGAAGGTGCGACGAGTGGCTTTTGTCACTGCAATACCAAAATCGCCTGCAGGGAAGATCCTTCGGCGGGAGCTTGN
GCAGCAGGCCCTGTCGATGGGTGCCTCCAAGCTTTGAAATGTGTAATTTGCTGCAGTAGTCTAGTAGAGAATATTTTGCT
TACATATAGTGAACTGGAGATTTATAGGCCTCAAGCTTTACCAATTAACACCTCCTTTGGAGGCTGAGAAATTTTGGGGG
GAATTTTGGAGGACTACGAAAATTATGTAAATTCCCATGTTCCAGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5174.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis