Browse Element(s) Details


Os.51740.1.S1_at

Description gb:AK063577.1
DB_XREF= gi:32973595
TID=Os.51740.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51740 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-117-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-H03, full insert sequence.
FL= gb:AK063577.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0748011/11integral membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g07440Os.8451.1.S1_at3/119+3718390..3723265transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g07450NANA9+3725392..3729896Flavonol synthase, putative
LOC_Os09g07460Os.28064.1.S1_at11/119+3731450..3733886Kelch motif family protein, expressed
LOC_Os09g07470OsAffx.29746.1.S1_at11/119+3741150..3741637hypothetical protein
LOC_Os09g07480Os.51740.1.S1_at11/119+3744713..3748009integral membrane protein, putative, expressed
LOC_Os09g07480OsAffx.6194.1.S1_at10/119+3744713..3748009integral membrane protein, putative, expressed
LOC_Os09g07480Os.54271.1.S1_at1/119+3744713..3748009integral membrane protein, putative, expressed
LOC_Os09g07480OsAffx.29386.1.S1_at1/119+3744713..3748009integral membrane protein, putative, expressed
LOC_Os09g07490OsAffx.17040.4.S1_at8/119+3749054..3749758expressed protein
LOC_Os09g07500Os.50908.1.S1_at11/119+3750060..3752652expressed protein
LOC_Os09g07510Os.1308.1.S1_at11/119+3756934..3763491Serine/threonine protein phosphatase 2A, 65 kDa regulatory subunit A,alpha isoform, putative, expressed
LOC_Os09g07520NANA9+3769533..3769862hypothetical protein
LOC_Os09g07530NANA9+3771215..3773590retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51740.1.S1_at--556--3731Chr09:3746782..3746806 (25 bp)
CTACTTGATTGCTTCCATGGGTCTA
LOC_Os09g07480
Os.51740.1.S1_at--527--3491Chr09:3746797..3746821 (25 bp)
CATGGGTCTACAGCTTCTTTGGAGT
LOC_Os09g07480
Os.51740.1.S1_at--173--6051Chr09:3746865..3746889 (25 bp)
GAGATCTTCATAACCCAGTGCTTGT
LOC_Os09g07480
Os.51740.1.S1_at--1046--2151Chr09:3747693..3747717 (25 bp)
ACAGCGATTCTTTCGTTTGCAGCAG
LOC_Os09g07480
Os.51740.1.S1_at--1021--5751Chr09:3747756..3747780 (25 bp)
GACGTGCACTTCTGTAGGATGTACC
LOC_Os09g07480
Os.51740.1.S1_at--39--991Chr09:3747771..3747795 (25 bp)
AGGATGTACCCGCAGCTTTCGTGTG
LOC_Os09g07480
Os.51740.1.S1_at--587--7711Chr09:3747795..3747819 (25 bp)
GGTCGTTACGAGCTTTCAGTTATCT
LOC_Os09g07480
Os.51740.1.S1_at--698--2011Chr09:3747875..3747899 (25 bp)
ACTAGCTTCGCTTTGAATCGTATCA
LOC_Os09g07480
Os.51740.1.S1_at--328--3591Chr09:3747898..3747922 (25 bp)
CATTATCGCTGTCATGTTGTGCTAA
LOC_Os09g07480
Os.51740.1.S1_at--553--6631Chr09:3747913..3747937 (25 bp)
GTTGTGCTAACCATCAGGATTCCAT
LOC_Os09g07480
Os.51740.1.S1_at--568--7931Chr09:3747929..3747953 (25 bp)
GGATTCCATCAAATGTACTCTGCTT
LOC_Os09g07480
Target Sequence 
CTACTTGATTGCTTCCATGGGTCTACAGCTTCTTTGGAGTTTTGGACTTGCTTGTCTNGGATATCTATTCATTACAAACT
AAAAGAGATCTTCATAACCCAGTGCTTGTAAGCCTGTTTGTTGTTGGTGATTGGGTTACAGCGATTCTTTCGTTTGCAGC
AGCTTCTGCTTCTGCTGGTGTCACTATTCTTTTTGAGAGAGACGTGCACTTCTGTAGGATGTACCCGCAGCTTTCGTGTG
GTCGTTACGAGCTTTCAGTTATCTTGGCATTCATCACATGNGTCGTTCATAGCTACATCANGCTGTTTCCATGTTTTGGT
TACTAGCTTCGCTTTGAATCGTATCATTATCGCTGTCATGTTGTGCTAACCATCAGGATTCCATCAAATGTACTCTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51740.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis