Browse Element(s) Details


Os.51748.1.S1_at

Description gb:AK063601.1
DB_XREF= gi:32973619
TID=Os.51748.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51748 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-B11, full insert sequence.
FL= gb:AK063601.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0469011/11Cycloartenol synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04660Os.17772.1.S1_at10/112+2087121..2093051Protein arginine N-methyltransferase 5, putative, expressed
LOC_Os02g04660OsAffx.4369.1.S1_at1/112+2087121..2093051Protein arginine N-methyltransferase 5, putative, expressed
LOC_Os02g04670Os.5742.1.S2_at11/112+2096519..2101451Glucan endo-1,3-beta-glucosidase 6 precursor, putative, expressed
LOC_Os02g04670Os.5742.1.S1_a_at11/112+2096519..2101451Glucan endo-1,3-beta-glucosidase 6 precursor, putative, expressed
LOC_Os02g04670Os.56065.1.S1_s_at1/112+2096519..2101451Glucan endo-1,3-beta-glucosidase 6 precursor, putative, expressed
LOC_Os02g04680OsAffx.11893.1.S1_at11/112+2106371..2110538SBP domain containing protein, expressed
LOC_Os02g04680OsAffx.11893.1.S1_s_at11/112+2106371..2110538SBP domain containing protein, expressed
LOC_Os02g04690Os.17826.1.A1_at11/112+2110921..2120419Cycloartenol synthase, putative, expressed
LOC_Os02g04690Os.51748.1.S1_x_at11/112+2110921..2120419Cycloartenol synthase, putative, expressed
LOC_Os02g04690Os.51748.1.S1_at11/112+2110921..2120419Cycloartenol synthase, putative, expressed
LOC_Os02g04690OsAffx.29895.1.S1_at1/112+2110921..2120419Cycloartenol synthase, putative, expressed
LOC_Os02g04700Os.50456.1.A1_a_at11/112+2124896..2128690Aspartyl-tRNA synthetase, putative, expressed
LOC_Os02g04710Os.2342.1.S1_at10/112+2128415..2137095Cycloartenol synthase, putative, expressed
LOC_Os02g04720NANA2+2140691..2141328hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019745biological_processpentacyclic triterpenoid biosynthesis
GO:0016871molecular_functioncycloartenol synthase activity
GO:0042299molecular_functionlupeol synthase activity
GO:0042300molecular_functionbeta-amyrin synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51748.1.S1_at--1096--9691Chr02:2114997..2115021 (25 bp)
TCAACAGTAAGCTTATCCACATATT
LOC_Os02g04690
Os.51748.1.S1_at--910--2111Chr02:2114994..2115018 (25 bp)
ACAGTAAGCTTATCCACATATTTGC
LOC_Os02g04690
Os.51748.1.S1_at--664--4891Chr02:2114987..2115011 (25 bp)
GCTTATCCACATATTTGCTTATCTT
LOC_Os02g04690
Os.51748.1.S1_at--409--10191Chr02:2114976..2115000 (25 bp)
TATTTGCTTATCTTAATCACATTGC
LOC_Os02g04690
Os.51748.1.S1_at--804--4891Chr02:2114971..2114995 (25 bp)
GCTTATCTTAATCACATTGCAAAAT
LOC_Os02g04690
Os.51748.1.S1_at--211--10331Chr02:2114935..2114959 (25 bp)
TTTCAGTTGATACTTACGTATTTGC
LOC_Os02g04690
Os.51748.1.S1_at--1104--6471Chr02:2114927..2114951 (25 bp)
GATACTTACGTATTTGCATCATTCT
LOC_Os02g04690
Os.51748.1.S1_at--133--6891Chr02:2114918..2114942 (25 bp)
GTATTTGCATCATTCTTTTTAACTG
LOC_Os02g04690
Os.51748.1.S1_at--627--4971Chr02:2114912..2114936 (25 bp)
GCATCATTCTTTTTAACTGACTCTA
LOC_Os02g04690
Os.51748.1.S1_at--639--9551Chr02:2114905..2114929 (25 bp)
TCTTTTTAACTGACTCTATGCACAA
LOC_Os02g04690
Os.51748.1.S1_at--1065--3691Chr02:2114890..2114914 (25 bp)
CTATGCACAAAATCTGTGTGGTGTA
LOC_Os02g04690
Target Sequence 
TCAACAGTAAGCTTATCCACATATTTGCTTATCTTAATCACATTGCAAAATTATTTTAGCATTTTCAGTTGATACTTACG
TATTTGCATCATTCTTTTTAACTGACTCTATGCACAAAATCTGTGTGGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51748.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis