Browse Element(s) Details


Os.51791.1.S1_at

Description gb:AK063721.1
DB_XREF= gi:32973739
TID=Os.51791.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51791 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033084J17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-120-D01, full insert sequence.
FL= gb:AK102116.1 gb:AK063721.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0697011/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06940Os.13559.1.S1_at11/113+3504226..3510461Beta-galactosidase precursor, putative, expressed
LOC_Os03g06950Os.27134.1.A1_at11/113+3519262..3529808Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os03g06950Os.10708.2.S1_at1/113+3519262..3529808Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os03g06960Os.18361.1.S1_at11/113+3530886..3533526Vesicle-associated membrane protein 724, putative, expressed
LOC_Os03g06970Os.51791.1.S1_at11/113+3534601..3537463TPR Domain containing protein, expressed
LOC_Os03g06980Os.18512.1.S1_at11/113+3540707..3544476expressed protein
LOC_Os03g06980OsAffx.12759.1.S1_s_at11/113+3540707..3544476expressed protein
LOC_Os03g06990OsAffx.3158.1.S1_at11/113+3545888..3547932oxidoreductase, 2OG-Fe oxygenase family protein, putative
LOC_Os03g07000OsAffx.25000.1.S1_at11/113+3549088..3550939prolyl 4-hydroxylase, putative, expressed
LOC_Os03g07010OsAffx.3900.1.S1_at11/113+3552527..3555974retrotransposon protein, putative, unclassified
LOC_Os03g07010OsAffx.21921.1.S1_at1/113+3552527..3555974retrotransposon protein, putative, unclassified
LOC_Os03g07010OsAffx.3584.1.S1_x_at1/113+3552527..3555974retrotransposon protein, putative, unclassified
LOC_Os03g07020NANA3+3558912..3562217retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009556biological_processmicrosporogenesis
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51791.1.S1_at--981--10771Chr03:3535123..3535147 (25 bp)
TTGATGGCCCGCATCACCGGCGAGG
LOC_Os03g06970
Os.51791.1.S1_at--796--1271Chr03:3534948..3534972 (25 bp)
AGATCACTCCGGTCTGCAGGGAGCA
LOC_Os03g06970
Os.51791.1.S1_at--1018--8251Chr03:3534920..3534944 (25 bp)
GGCAGCTTGCTAGAAGATGGTAATT
LOC_Os03g06970
Os.51791.1.S1_at--715--10451Chr03:3534864..3534888 (25 bp)
TTAGCAGGTCCATCATCTAGTGTTG
LOC_Os03g06970
Os.51791.1.S1_at--420--291Chr03:3534830..3534854 (25 bp)
ATAGAATTTCATGCACCTATCCGAC
LOC_Os03g06970
Os.51791.1.S1_at--1069--1511Chr03:3534807..3534831 (25 bp)
ACGTGTCAACGGCTTCAACTTTATA
LOC_Os03g06970
Os.51791.1.S1_at--766--5471Chr03:3534778..3534802 (25 bp)
GAACTAGCTGCAGGTGCATGAAGCT
LOC_Os03g06970
Os.51791.1.S1_at--697--5391Chr03:3534759..3534783 (25 bp)
GAAGCTAAGCATGCATGGATGTTTT
LOC_Os03g06970
Os.51791.1.S1_at--1066--7471Chr03:3534678..3534702 (25 bp)
GTGTGTGTGACCAGTTGCATGTTTT
LOC_Os03g06970
Os.51791.1.S1_at--792--4991Chr03:3534662..3534686 (25 bp)
GCATGTTTTGTACTCTGGTTGTGTT
LOC_Os03g06970
Os.51791.1.S1_at--5--7931Chr03:3534646..3534670 (25 bp)
GGTTGTGTTGTTGTGTACTTATGTA
LOC_Os03g06970
Target Sequence 
TTGATGGCCCGCATCACCGGCGAGGTCGACGGCCGGAGCAACAGCAGCGGCGGCAGCAGCAGCGACGACGACGACCGCGA
CGTCGAGGACGAGATGGTGGAGCTGCTAGACGTGGTGGTCCGGCAGTGGGCGGCGCCGTACAGGAGGAGCAACCGGAGGC
TGCCGGTCTTCGAGGAGATCACTCCGGTCTGCAGGGAGCAGATGGCAGCTTGCTAGAAGATGGTAATTAATTAAGAGTAG
TAGCAAATTGTTAATTAAATTAGCAGGTCCATCATCTAGTGTTGGGTAGATATATAGAATTTCATGCACCTATCCGACGT
GTCAACGGCTTCAACTTTATAGGGAGAACTAGCTGCAGGTGCATGAAGCTAAGCATGCATGGATGTTTTTTTTTCTTGTG
AGTGTGTGTGTGTGAAATTAATAGTGTGAGATAGAGAAGTATAATGTGTGTGTGACCAGTTGCATGTTTTGTACTCTGGT
TGTGTTGTTGTGTACTTATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51791.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis