Browse Element(s) Details


Os.51799.1.S1_at

Description gb:AK063740.1
DB_XREF= gi:32973758
TID=Os.51799.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51799 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-120-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-120-F07, full insert sequence.
FL= gb:AK063740.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4076011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40720OsAffx.23612.1.S1_at11/111+23332601..23335789pentatricopeptide, putative
LOC_Os01g40730Os.41397.1.S1_at7/111+23340272..23340787hypothetical protein
LOC_Os01g40730Os.41397.1.S1_x_at3/111+23340272..23340787hypothetical protein
LOC_Os01g40730Os.27284.1.S1_at1/111+23340272..23340787hypothetical protein
LOC_Os01g40740Os.41397.1.S1_x_at3/111+23342355..23343966hypothetical protein
LOC_Os01g40750Os.27284.1.S1_at11/111+23349926..23352964expressed protein
LOC_Os01g40750Os.41397.1.S1_x_at8/111+23349926..23352964expressed protein
LOC_Os01g40760Os.51799.1.S1_at11/111+23357121..23357848expressed protein
LOC_Os01g40770OsAffx.19950.1.S1_at1/111+23359896..23361926Transposable element protein, putative, Retrotrans_gag
LOC_Os01g40780OsAffx.1196.1.S1_at2/111+23362713..23364078hypothetical protein
LOC_Os01g40780OsAffx.1196.1.S1_x_at1/111+23362713..23364078hypothetical protein
LOC_Os01g40790OsAffx.30226.1.S1_at2/111+23375982..23376885hypothetical protein
LOC_Os01g40790OsAffx.30226.1.S1_x_at1/111+23375982..23376885hypothetical protein
LOC_Os01g40800NANA1+23379277..23382360retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51799.1.S1_at--109--4531Chr01:23357249..23357273 (25 bp)
GCCGCGTGGATCAACCAGCTCTGTG
LOC_Os01g40760
Os.51799.1.S1_at--1074--7951Chr01:23357256..23357280 (25 bp)
GGATCAACCAGCTCTGTGGTGCTTC
LOC_Os01g40760
Os.51799.1.S1_at--1070--9451Chr01:23357268..23357292 (25 bp)
TCTGTGGTGCTTCGCCGTCATCACA
LOC_Os01g40760
Os.51799.1.S1_at--1042--5631Chr01:23357334..23357358 (25 bp)
GACAGCGCTTGGTTTCGTCGCCATC
LOC_Os01g40760
Os.51799.1.S1_at--349--631Chr01:23357368..23357392 (25 bp)
ATGCTTTGCTCCTCCGCATGCGCTA
LOC_Os01g40760
Os.51799.1.S1_at--776--8931Chr01:23357446..23357470 (25 bp)
TGACGCTACCTCTCAGCATGGCAGA
LOC_Os01g40760
Os.51799.1.S1_at--335--5011Chr01:23357461..23357485 (25 bp)
GCATGGCAGACGCTTCTCCTTCTCA
LOC_Os01g40760
Os.51799.1.S1_at--361--5451Chr01:23357500..23357524 (25 bp)
GAACCCAGCGGGTGTCCAGTACCCG
LOC_Os01g40760
Os.51799.1.S1_at--910--7091Chr01:23357614..23357638 (25 bp)
GTCAGCTTCCCTACTACGAAGTTTA
LOC_Os01g40760
Os.51799.1.S1_at--19--6051Chr01:23357671..23357695 (25 bp)
GAGTTTCGTAGGGAGCCAGAAAGAT
LOC_Os01g40760
Os.51799.1.S1_at--240--2311Chr01:23357781..23357805 (25 bp)
AAAGGCTTACGGAAATTCCATGCAA
LOC_Os01g40760
Target Sequence 
GCCGCGTGGATCAACCAGCTCTGTGGTGCTTCGCCGTCATCACATCCACGCTGCAGCTCCTGCCGTTGCCGCCTCCGCGC
CGCGCGACAGCGCTTGGTTTCGTCGCCATCTCCCCGCCGATGCTTTGCTCCTCCGCATGCGCTACCGCCGCCTCTCCGCA
TCACGCCGCCTCTGCTCGACTACTCCTCGCACCACACTGACGCTACCTCTCAGCATGGCAGACGCTTCTCCTTCTCACCG
TCGGGGGTGAGGAACCCAGCGGGTGTCCAGTACCCGCACGGGGACGGGGACGGGAGAAAACCACGCCCCGTGTGCGGGGA
TAGGGACAGGGAACGGGGGAGTTTTTCCGCTAGGGGGCGGGGACGGTCAGCTTCCCTACTACGAAGTTTACCCCGTCCTT
ACTTTGGAAACATGGGGAGGGGGAGTTTCGTAGGGAGCCAGAAAGATAAGTAGAGAACTCTGAAAAATTAACAAAAACAT
TAAAAACAACAGAAAAAACACAGAAGTATCTATTTAAACAAGATAGAATGGAAAAGGCTTACGGAAATTCCATGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51799.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis