Browse Element(s) Details


Os.41397.1.S1_x_at

Description gb:BI802754
DB_XREF= gi:16575458
DB_XREF=H088H06
CLONE=H088H06
TID=Os.41397.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.41397 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0415C01.20 (P0415C01.20), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g407508/11expressed protein
LOC_Os01g407403/11hypothetical protein
LOC_Os01g407303/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40690Os.11068.4.S1_x_at11/111+23322899..23325189holocarboxylase synthetase, putative, expressed
LOC_Os01g40690Os.11068.1.S1_a_at11/111+23322899..23325189holocarboxylase synthetase, putative, expressed
LOC_Os01g40700Os.7488.1.S1_s_at11/111+23326953..23329280expressed protein
LOC_Os01g40700Os.41402.1.S1_x_at11/111+23326953..23329280expressed protein
LOC_Os01g40710Os.15183.1.S1_at11/111+23330543..23331858expressed protein
LOC_Os01g40720OsAffx.23612.1.S1_at11/111+23332601..23335789pentatricopeptide, putative
LOC_Os01g40730Os.41397.1.S1_at7/111+23340272..23340787hypothetical protein
LOC_Os01g40730Os.41397.1.S1_x_at3/111+23340272..23340787hypothetical protein
LOC_Os01g40730Os.27284.1.S1_at1/111+23340272..23340787hypothetical protein
LOC_Os01g40740Os.41397.1.S1_x_at3/111+23342355..23343966hypothetical protein
LOC_Os01g40750Os.27284.1.S1_at11/111+23349926..23352964expressed protein
LOC_Os01g40750Os.41397.1.S1_x_at8/111+23349926..23352964expressed protein
LOC_Os01g40760Os.51799.1.S1_at11/111+23357121..23357848expressed protein
LOC_Os01g40770OsAffx.19950.1.S1_at1/111+23359896..23361926Transposable element protein, putative, Retrotrans_gag
LOC_Os01g40780OsAffx.1196.1.S1_at2/111+23362713..23364078hypothetical protein
LOC_Os01g40780OsAffx.1196.1.S1_x_at1/111+23362713..23364078hypothetical protein
LOC_Os01g40790OsAffx.30226.1.S1_at2/111+23375982..23376885hypothetical protein
LOC_Os01g40790OsAffx.30226.1.S1_x_at1/111+23375982..23376885hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41397.1.S1_x_at--691--3212Chr01:23351707..23351731 (25 bp)
CAAGGAGATGCTCCAGATCTTCTCT
LOC_Os01g40750
Os.41397.1.S1_x_at--647--6411Chr01:23351692..23351716 (25 bp)
GATCTTCTCTTTGAGGTTGTCCAGC
LOC_Os01g40750
Os.41397.1.S1_x_at--387--1592Chr01:23351670..23351694 (25 bp)
AGCTCCATGTCCTATCCTATTAGTG
LOC_Os01g40750
Os.41397.1.S1_x_at--680--6992Chr01:23351628..23351652 (25 bp)
GTACGTGATTACTTGGACCCTTTGA
LOC_Os01g40750
Os.41397.1.S1_x_at--707--6371Chr01:23350563..23350587 (25 bp)
GATCCTCGTCATGTGAGATTCACTG
LOC_Os01g40750
Os.41397.1.S1_x_at--81--8311Chr01:23350527..23350551 (25 bp)
GGCTTTGACCGTGAGATTTTGCTGT
LOC_Os01g40750
Os.41397.1.S1_x_at--964--2831Chr01:23350479..23350503 (25 bp)
AAGTCTTTCCAGCACATTGTGGCAA
LOC_Os01g40750
Os.41397.1.S1_x_at--1081--6372Chr01:23350412..23350436 (25 bp)
GATCCCTGTTTTGCTGGACTTTTAA
LOC_Os01g40750
Os.41397.1.S1_x_at--1084--3451Chr01:23340339..23340362 (24 bp)
CAGGGTGGTCTTTTCTCCAAAACAT
LOC_Os01g40730
Os.41397.1.S1_x_at--1083--2491NONE
AACATGTGTACCACCATACCTACAT
NONE
Os.41397.1.S1_x_at--568--1751Chr01:23340300..23340325 (25 bp)
ACCTACATAGCTTCTTTTTGTGGAG
LOC_Os01g40730
Target Sequence 
CAAGGAGATGCTCCAGATCTTCTCTTTGAGGTTGTCCAGCTCCATGTCCTATCCTATTAGTGTTTACGGAATCTTTGCAG
TACGTGATTACTTGGACCCTTTGAGGAATTATGTCTTCANNNNNNNNANANANNNTNNNGTNNNNNTTNNACAGAGTATT
GAAGCTGTCATNACAAGTATCCACAGAGATTGACAGTAACGATCCTCGTCATGTGAGATTCACTGCATTTTGTAGTGGCT
TTGACCGTGAGATTTTGCTGTTCAATGGGAAATTCTGCAAGGACAAGTCTTTCCAGCACATTGTGGCAANTGAAGTCCAA
GGGAAAACTGGTTGTTCACTTGGAGTTTGAGGGATCCCTGTTTTGCTGGACTTTTAACAATGGNNANNTTNNNGNTGNNN
ANTCTCCCGATGATTCAGTCCTGAAGCAATTTCATGTCAGGGTGGTCTTTTCTCCAAAACATGTGTACCACCATACCTAC
ATAGCTTCTTTTTGTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41397.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis