Browse Element(s) Details


Os.41397.1.S1_at

Description gb:BI802754
DB_XREF= gi:16575458
DB_XREF=H088H06
CLONE=H088H06
TID=Os.41397.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.41397 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0415C01.20 (P0415C01.20), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g407307/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40670Os.8369.1.S1_at11/111+23315077..23318787single myb histone 1, putative, expressed
LOC_Os01g40680OsAffx.23610.1.S1_at11/111+23319400..23321019pentatricopeptide, putative
LOC_Os01g40690Os.11068.4.S1_x_at11/111+23322899..23325189holocarboxylase synthetase, putative, expressed
LOC_Os01g40690Os.11068.1.S1_a_at11/111+23322899..23325189holocarboxylase synthetase, putative, expressed
LOC_Os01g40700Os.7488.1.S1_s_at11/111+23326953..23329280expressed protein
LOC_Os01g40700Os.41402.1.S1_x_at11/111+23326953..23329280expressed protein
LOC_Os01g40710Os.15183.1.S1_at11/111+23330543..23331858expressed protein
LOC_Os01g40720OsAffx.23612.1.S1_at11/111+23332601..23335789pentatricopeptide, putative
LOC_Os01g40730Os.41397.1.S1_at7/111+23340272..23340787hypothetical protein
LOC_Os01g40730Os.41397.1.S1_x_at3/111+23340272..23340787hypothetical protein
LOC_Os01g40730Os.27284.1.S1_at1/111+23340272..23340787hypothetical protein
LOC_Os01g40740Os.41397.1.S1_x_at3/111+23342355..23343966hypothetical protein
LOC_Os01g40750Os.27284.1.S1_at11/111+23349926..23352964expressed protein
LOC_Os01g40750Os.41397.1.S1_x_at8/111+23349926..23352964expressed protein
LOC_Os01g40760Os.51799.1.S1_at11/111+23357121..23357848expressed protein
LOC_Os01g40770OsAffx.19950.1.S1_at1/111+23359896..23361926Transposable element protein, putative, Retrotrans_gag
LOC_Os01g40780OsAffx.1196.1.S1_at2/111+23362713..23364078hypothetical protein
LOC_Os01g40780OsAffx.1196.1.S1_x_at1/111+23362713..23364078hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41397.1.S1_at--1085--3451Chr01:23340339..23340362 (24 bp)
CAGGGTGGTCTTTTCTCCAAAACAT
LOC_Os01g40730
Os.41397.1.S1_at--159--5331Chr01:23340339..23340360 (22 bp)
GGGTGGTCTTTTCTCCAAAACATGT
LOC_Os01g40730
Os.41397.1.S1_at--487--7731Chr01:23340334..23340359 (25 bp)
GGTGGTCTTTTCTCCAAAACATGTG
LOC_Os01g40730
Os.41397.1.S1_at--374--8571Chr01:23340332..23340357 (25 bp)
TGGTCTTTTCTCCAAAACATGTGTA
LOC_Os01g40730
Os.41397.1.S1_at--379--10591NONE
TTCTCCAAAACATGTGTACCACCAT
NONE
Os.41397.1.S1_at--1084--2491NONE
AACATGTGTACCACCATACCTACAT
NONE
Os.41397.1.S1_at--496--1731NONE
ACCATACCTACATAGCTTCTTTTTG
NONE
Os.41397.1.S1_at--159--311Chr01:23340302..23340325 (23 bp)
ATACCTACATAGCTTCTTTTTGTGG
LOC_Os01g40730
Os.41397.1.S1_at--661--4291Chr01:23340299..23340324 (25 bp)
CCTACATAGCTTCTTTTTGTGGAGA
LOC_Os01g40730
Os.41397.1.S1_at--194--2091Chr01:23340296..23340318 (23 bp)
ACATAGCTTCTTTTTGTGGAGAAGA
LOC_Os01g40730
Os.41397.1.S1_at--631--1471Chr01:23340271..23340295 (25 bp)
AGCAAATCAGTACAAAAGGCTTGAT
NONE
Target Sequence 
CAGGGTGGTCTTTTCTCCAAAACATGTGTACCACCATACCTACATAGCTTCTTTTTGTGGAGAAGAAGCAAATCAGTACA
AAAGGCTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41397.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis