Browse Element(s) Details


OsAffx.23610.1.S1_at

Description gb:NM_192566.1
DB_XREF= gi:34912215
GEN=P0415C01.10
TID=OsAffx.23610.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0415C01.10 (P0415C01.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4068011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40640Os.38077.1.S1_at11/111+23306806..23310002S1 RNA binding domain PF|00575 containing protein, putative, expressed
LOC_Os01g40640Os.38077.2.S1_x_at9/111+23306806..23310002S1 RNA binding domain PF|00575 containing protein, putative, expressed
LOC_Os01g40640Os.38077.2.S1_at1/111+23306806..23310002S1 RNA binding domain PF|00575 containing protein, putative, expressed
LOC_Os01g40650Os.14549.1.S1_at11/111+23310240..23312635expressed protein
LOC_Os01g40650Os.7579.1.S1_at1/111+23310240..23312635expressed protein
LOC_Os01g40660Os.45941.1.S1_at11/111+23313596..23314735embryo-abundant protein, putative, expressed
LOC_Os01g40670Os.8369.1.S1_at11/111+23315077..23318787single myb histone 1, putative, expressed
LOC_Os01g40680OsAffx.23610.1.S1_at11/111+23319400..23321019pentatricopeptide, putative
LOC_Os01g40690Os.11068.4.S1_x_at11/111+23322899..23325189holocarboxylase synthetase, putative, expressed
LOC_Os01g40690Os.11068.1.S1_a_at11/111+23322899..23325189holocarboxylase synthetase, putative, expressed
LOC_Os01g40700Os.7488.1.S1_s_at11/111+23326953..23329280expressed protein
LOC_Os01g40700Os.41402.1.S1_x_at11/111+23326953..23329280expressed protein
LOC_Os01g40710Os.15183.1.S1_at11/111+23330543..23331858expressed protein
LOC_Os01g40720OsAffx.23612.1.S1_at11/111+23332601..23335789pentatricopeptide, putative
LOC_Os01g40730Os.41397.1.S1_at7/111+23340272..23340787hypothetical protein
LOC_Os01g40730Os.41397.1.S1_x_at3/111+23340272..23340787hypothetical protein
LOC_Os01g40730Os.27284.1.S1_at1/111+23340272..23340787hypothetical protein
LOC_Os01g40740Os.41397.1.S1_x_at3/111+23342355..23343966hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23610.1.S1_at--1083--9271Chr01:23319963..23319987 (25 bp)
TCCGGCTCGACAGCCGATCTGGAGA
LOC_Os01g40680
OsAffx.23610.1.S1_at--1080--5631Chr01:23319955..23319979 (25 bp)
GACAGCCGATCTGGAGAAGGTGTTC
LOC_Os01g40680
OsAffx.23610.1.S1_at--857--6131Chr01:23319753..23319777 (25 bp)
GAGGGGATGGCCTACTTCGACGCCA
LOC_Os01g40680
OsAffx.23610.1.S1_at--640--6711Chr01:23319700..23319724 (25 bp)
GTTCGAGCACTACGTCGGCGCCATC
LOC_Os01g40680
OsAffx.23610.1.S1_at--180--7531Chr01:23319595..23319619 (25 bp)
GTGGACGACGCTCCTGCACTGCTGC
LOC_Os01g40680
OsAffx.23610.1.S1_at--530--9031Chr01:23319581..23319605 (25 bp)
TGCACTGCTGCCTGGCTCACAAGAA
LOC_Os01g40680
OsAffx.23610.1.S1_at--982--9091Chr01:23319576..23319600 (25 bp)
TGCTGCCTGGCTCACAAGAACTGCT
LOC_Os01g40680
OsAffx.23610.1.S1_at--1027--1431Chr01:23319560..23319584 (25 bp)
AGAACTGCTCTATCGGGAGCGTCGC
LOC_Os01g40680
OsAffx.23610.1.S1_at--636--1571Chr01:23319527..23319551 (25 bp)
AGCTCAGAGCGCTGCAGCCCGACGG
LOC_Os01g40680
OsAffx.23610.1.S1_at--318--8351Chr01:23319498..23319522 (25 bp)
GGCTGGAACTACGAGAGATTGCTGC
LOC_Os01g40680
OsAffx.23610.1.S1_at--216--3731Chr01:23319490..23319514 (25 bp)
CTACGAGAGATTGCTGCGAGGCTGC
LOC_Os01g40680
Target Sequence 
TCCGGCTCGACAGCCGATCTGGAGAAGGTGTTCGACGAGATGGCGGCGCGCGACGTCGTGTCGTGGAACACCGCGATACA
GGGGCTCGGCCAGAACGGCCGCGGGAGGCGAGCGCTGGCGTTCGCGGAGCGCGCGCTGGCGCTGGGGCTCTACAACGGCA
GCACCTTCGTCGCCATCCTGGCGTCGTGCAGCCACGCCGAGCTGGTCGCCGAGGGGATGGCCTACTTCGACGCCATGGAG
GTCGAGTACGGGGTGGAGCGCGCGTTCGAGCACTACGTCGGCGCCATCGATCTCCTCGGCCGCGCGGGGCGGCTGCGGGA
CGCGCACGGCCTGCTCCTCGGCATGCCGTTCGCGCCCAGCGCGCTGGCGTGGACGACGCTCCTGCACTGCTGCCTGGCTC
ACAAGAACTGCTCTATCGGGAGCGTCGCGGCGAGGGAGCTCAGAGCGCTGCAGCCCGACGGCGGCGGCTGGAACTACGAG
AGATTGCTGCGAGGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23610.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis