Browse Element(s) Details


Os.38077.2.S1_at

Description gb:NM_192563.1
DB_XREF= gi:34912209
GEN=P0415C01.7
TID=Os.38077.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.38077 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0415C01.7 (P0415C01.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0415C01.7 (P0415C01.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g406401/11S1 RNA binding domain PF|00575 containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40630Os.11222.1.S1_at11/111+23281831..23285994Lysine Decarboxylase, putative, expressed
LOC_Os01g40630Os.57185.1.S1_at11/111+23281831..23285994Lysine Decarboxylase, putative, expressed
LOC_Os01g40630Os.11222.2.S1_x_at10/111+23281831..23285994Lysine Decarboxylase, putative, expressed
LOC_Os01g40630Os.54477.1.S1_at1/111+23281831..23285994Lysine Decarboxylase, putative, expressed
LOC_Os01g40640Os.38077.1.S1_at11/111+23306806..23310002S1 RNA binding domain PF|00575 containing protein, putative, expressed
LOC_Os01g40640Os.38077.2.S1_x_at9/111+23306806..23310002S1 RNA binding domain PF|00575 containing protein, putative, expressed
LOC_Os01g40640Os.38077.2.S1_at1/111+23306806..23310002S1 RNA binding domain PF|00575 containing protein, putative, expressed
LOC_Os01g40650Os.14549.1.S1_at11/111+23310240..23312635expressed protein
LOC_Os01g40650Os.7579.1.S1_at1/111+23310240..23312635expressed protein
LOC_Os01g40660Os.45941.1.S1_at11/111+23313596..23314735embryo-abundant protein, putative, expressed
LOC_Os01g40670Os.8369.1.S1_at11/111+23315077..23318787single myb histone 1, putative, expressed
LOC_Os01g40680OsAffx.23610.1.S1_at11/111+23319400..23321019pentatricopeptide, putative
LOC_Os01g40690Os.11068.4.S1_x_at11/111+23322899..23325189holocarboxylase synthetase, putative, expressed
LOC_Os01g40690Os.11068.1.S1_a_at11/111+23322899..23325189holocarboxylase synthetase, putative, expressed
LOC_Os01g40700Os.7488.1.S1_s_at11/111+23326953..23329280expressed protein
LOC_Os01g40700Os.41402.1.S1_x_at11/111+23326953..23329280expressed protein
LOC_Os01g40710Os.15183.1.S1_at11/111+23330543..23331858expressed protein
LOC_Os01g40720OsAffx.23612.1.S1_at11/111+23332601..23335789pentatricopeptide, putative

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38077.2.S1_at--53--4171NONE
CGCCAGGCAGGTTGGTTGCAGCATA
NONE
Os.38077.2.S1_at--72--10371Chr01:23308195..23308214 (20 bp)
TTTTTCCGTATGGTGCTCAGAGAGT
LOC_Os01g40640
Os.38077.2.S1_at--1135--10371NONE
TTTTCCGTATGGTGCTCAGAGAGTG
NONE
Os.38077.2.S1_at--609--10291NONE
TTTCCGTATGGTGCTCAGAGAGTGT
NONE
Os.38077.2.S1_at--862--10651NONE
TTCCGTATGGTGCTCAGAGAGTGTT
NONE
Os.38077.2.S1_at--1018--9271NONE
TCCGTATGGTGCTCAGAGAGTGTTC
NONE
Os.38077.2.S1_at--1030--4231NONE
CCGTATGGTGCTCAGAGAGTGTTCT
NONE
Os.38077.2.S1_at--553--4031NONE
CGTATGGTGCTCAGAGAGTGTTCTC
NONE
Os.38077.2.S1_at--707--6911NONE
GTATGGTGCTCAGAGAGTGTTCTCA
NONE
Os.38077.2.S1_at--526--10111NONE
TATGGTGCTCAGAGAGTGTTCTCAG
NONE
Os.38077.2.S1_at--856--811NONE
ATGGTGCTCAGAGAGTGTTCTCAGA
NONE
Target Sequence 
CGCCAGGCAGGTTGGTTGCAGCATACGTGTGTGCATTACAAGGCTTGATGAAGAAACTAATGACCTGATAATTAGTGAAA
AGAAAGCATGGGAAATGACATATCTTAAAGAAGGAACTCTTCTTCAAGGGATCGTTCACAAGATTTTTCCGTATGGTGCT
CAGAGAGTGTTCTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38077.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis