Browse Element(s) Details


Os.38077.2.S1_x_at

Description gb:NM_192563.1
DB_XREF= gi:34912209
GEN=P0415C01.7
TID=Os.38077.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.38077 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0415C01.7 (P0415C01.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0415C01.7 (P0415C01.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g406409/11S1 RNA binding domain PF|00575 containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40630Os.11222.1.S1_at11/111+23281831..23285994Lysine Decarboxylase, putative, expressed
LOC_Os01g40630Os.57185.1.S1_at11/111+23281831..23285994Lysine Decarboxylase, putative, expressed
LOC_Os01g40630Os.11222.2.S1_x_at10/111+23281831..23285994Lysine Decarboxylase, putative, expressed
LOC_Os01g40630Os.54477.1.S1_at1/111+23281831..23285994Lysine Decarboxylase, putative, expressed
LOC_Os01g40640Os.38077.1.S1_at11/111+23306806..23310002S1 RNA binding domain PF|00575 containing protein, putative, expressed
LOC_Os01g40640Os.38077.2.S1_x_at9/111+23306806..23310002S1 RNA binding domain PF|00575 containing protein, putative, expressed
LOC_Os01g40640Os.38077.2.S1_at1/111+23306806..23310002S1 RNA binding domain PF|00575 containing protein, putative, expressed
LOC_Os01g40650Os.14549.1.S1_at11/111+23310240..23312635expressed protein
LOC_Os01g40650Os.7579.1.S1_at1/111+23310240..23312635expressed protein
LOC_Os01g40660Os.45941.1.S1_at11/111+23313596..23314735embryo-abundant protein, putative, expressed
LOC_Os01g40670Os.8369.1.S1_at11/111+23315077..23318787single myb histone 1, putative, expressed
LOC_Os01g40680OsAffx.23610.1.S1_at11/111+23319400..23321019pentatricopeptide, putative
LOC_Os01g40690Os.11068.4.S1_x_at11/111+23322899..23325189holocarboxylase synthetase, putative, expressed
LOC_Os01g40690Os.11068.1.S1_a_at11/111+23322899..23325189holocarboxylase synthetase, putative, expressed
LOC_Os01g40700Os.7488.1.S1_s_at11/111+23326953..23329280expressed protein
LOC_Os01g40700Os.41402.1.S1_x_at11/111+23326953..23329280expressed protein
LOC_Os01g40710Os.15183.1.S1_at11/111+23330543..23331858expressed protein
LOC_Os01g40720OsAffx.23612.1.S1_at11/111+23332601..23335789pentatricopeptide, putative

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38077.2.S1_x_at--52--4171NONE
CGCCAGGCAGGTTGGTTGCAGCATA
NONE
Os.38077.2.S1_x_at--653--1911Chr01:23308765..23308789 (25 bp)
ACGTGTGTGCATTACAAGGCTTGAT
LOC_Os01g40640
Os.38077.2.S1_x_at--419--951Chr01:23308222..23308246 (25 bp)
AGGAACTCTTCTTCAAGGGATCGTT
LOC_Os01g40640
Os.38077.2.S1_x_at--1032--7631Chr01:23308206..23308230 (25 bp)
GGGATCGTTCACAAGATTTTTCCGT
LOC_Os01g40640
Os.38077.2.S1_x_at--73--10371Chr01:23308195..23308214 (20 bp)
TTTTTCCGTATGGTGCTCAGAGAGT
LOC_Os01g40640
Os.38077.2.S1_x_at--855--811NONE
ATGGTGCTCAGAGAGTGTTCTCAGA
NONE
Os.38077.2.S1_x_at--495--1331Chr01:23307515..23307539 (25 bp)
AGAGGTACCGGGAGCAGCTTCCAGC
LOC_Os01g40640
Os.38077.2.S1_x_at--512--1551Chr01:23307500..23307524 (25 bp)
AGCTTCCAGCTGACTCTAAGAACGC
LOC_Os01g40640
Os.38077.2.S1_x_at--571--4831Chr01:23307477..23307501 (25 bp)
GCTAAATTAGATGCTGACCTTCCAG
LOC_Os01g40640
Os.38077.2.S1_x_at--822--5831Chr01:23307462..23307486 (25 bp)
GACCTTCCAGGAGGAACAATTCCAT
LOC_Os01g40640
Os.38077.2.S1_x_at--1105--5391Chr01:23307429..23307453 (25 bp)
GAAGCTACATTATACGCAAACTGGA
LOC_Os01g40640
Target Sequence 
CGCCAGGCAGGTTGGTTGCAGCATACGTGTGTGCATTACAAGGCTTGATGAAGAAACTAATGACCTGATAATTAGTGAAA
AGAAAGCATGGGAAATGACATATCTTAAAGAAGGAACTCTTCTTCAAGGGATCGTTCACAAGATTTTTCCGTATGGTGCT
CAGAGAGTGTTCTCAGAAGCTGAGGAAATGGCAGAGAGGTACCGGGAGCAGCTTCCAGCTGACTCTAAGAACGCTAAATT
AGATGCTGACCTTCCAGGAGGAACAATTCCATTTGATGATGAAGCTACATTATACGCAAACTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38077.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis