Browse Element(s) Details


Os.15183.1.S1_at

Description gb:CR291996
DB_XREF= gi:44678562
DB_XREF=CR291996
CLONE=p603b05p5
TID=Os.15183.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.15183 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0415C01.15 (P0415C01.15), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4071011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40640Os.38077.1.S1_at11/111+23306806..23310002S1 RNA binding domain PF|00575 containing protein, putative, expressed
LOC_Os01g40640Os.38077.2.S1_x_at9/111+23306806..23310002S1 RNA binding domain PF|00575 containing protein, putative, expressed
LOC_Os01g40640Os.38077.2.S1_at1/111+23306806..23310002S1 RNA binding domain PF|00575 containing protein, putative, expressed
LOC_Os01g40650Os.14549.1.S1_at11/111+23310240..23312635expressed protein
LOC_Os01g40650Os.7579.1.S1_at1/111+23310240..23312635expressed protein
LOC_Os01g40660Os.45941.1.S1_at11/111+23313596..23314735embryo-abundant protein, putative, expressed
LOC_Os01g40670Os.8369.1.S1_at11/111+23315077..23318787single myb histone 1, putative, expressed
LOC_Os01g40680OsAffx.23610.1.S1_at11/111+23319400..23321019pentatricopeptide, putative
LOC_Os01g40690Os.11068.4.S1_x_at11/111+23322899..23325189holocarboxylase synthetase, putative, expressed
LOC_Os01g40690Os.11068.1.S1_a_at11/111+23322899..23325189holocarboxylase synthetase, putative, expressed
LOC_Os01g40700Os.7488.1.S1_s_at11/111+23326953..23329280expressed protein
LOC_Os01g40700Os.41402.1.S1_x_at11/111+23326953..23329280expressed protein
LOC_Os01g40710Os.15183.1.S1_at11/111+23330543..23331858expressed protein
LOC_Os01g40720OsAffx.23612.1.S1_at11/111+23332601..23335789pentatricopeptide, putative
LOC_Os01g40730Os.41397.1.S1_at7/111+23340272..23340787hypothetical protein
LOC_Os01g40730Os.41397.1.S1_x_at3/111+23340272..23340787hypothetical protein
LOC_Os01g40730Os.27284.1.S1_at1/111+23340272..23340787hypothetical protein
LOC_Os01g40740Os.41397.1.S1_x_at3/111+23342355..23343966hypothetical protein
LOC_Os01g40750Os.27284.1.S1_at11/111+23349926..23352964expressed protein
LOC_Os01g40750Os.41397.1.S1_x_at8/111+23349926..23352964expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009642biological_processresponse to light intensity
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15183.1.S1_at--608--7231Chr01:23330873..23330897 (25 bp)
GTCGCAGGATCCTGAGCCGAAGCAG
LOC_Os01g40710
Os.15183.1.S1_at--372--2911Chr01:23330973..23330997 (25 bp)
AAGGATCTGCAGGATTACTTCAAGC
LOC_Os01g40710
Os.15183.1.S1_at--25--271Chr01:23331013..23331037 (25 bp)
AGGCTGACCAGGGTCCCTTCTTTGG
LOC_Os01g40710
Os.15183.1.S1_at--379--9811Chr01:23331604..23331628 (25 bp)
TAACAGAGTACGCAACCGGCTCGGA
LOC_Os01g40710
Os.15183.1.S1_at--934--1771Chr01:23331618..23331642 (25 bp)
ACCGGCTCGGATTTTGTTCAACAAG
LOC_Os01g40710
Os.15183.1.S1_at--811--2751Chr01:23331645..23331669 (25 bp)
AAGATCCTTCTCTCCAATTTTGGGA
LOC_Os01g40710
Os.15183.1.S1_at--609--8111Chr01:23331680..23331704 (25 bp)
GGACTGATCGCGGATGTTTGACGTT
LOC_Os01g40710
Os.15183.1.S1_at--811--7991Chr01:23331691..23331715 (25 bp)
GGATGTTTGACGTTATTGTTCTGTA
LOC_Os01g40710
Os.15183.1.S1_at--1101--6891Chr01:23331733..23331757 (25 bp)
GTATCTTCTTTTATCCGACATATAG
LOC_Os01g40710
Os.15183.1.S1_at--408--2071Chr01:23331785..23331809 (25 bp)
ACTTGACTGCATTTGTGATGGCCTG
LOC_Os01g40710
Os.15183.1.S1_at--473--6231Chr01:23331801..23331825 (25 bp)
GATGGCCTGTCAGTTTTTGATGAAT
LOC_Os01g40710
Target Sequence 
GTCGCAGGATCCTGAGCCGAAGCAGNCCGCGGCGCCGGTGGCTGTGGCGGCGCCCGCGGCGGCGGGGNCCGTGACGTTGG
AGNACCAGAGGAAGGTGGCCAAGGATCTGCAGGATTACTTCAAGCAGAAGAAGCTGGACGAGGCTGACCAGGGTCCCTTC
TTTGGGTTCTTGGGCAAGAATGAGATTTCCAATGGAAGATGGGCTATGTTTGGGTTTGCAGTAGGGATGCTAACAGAGTA
CGCAACCGGCTCGGATTTTGTTCAACAAGTGAAGATCCTTCTCTCCAATTTTGGGATTGTGGATTTGGACTGATCGCGGA
TGTTTGACGTTATTGTTCTGTATAAGCATGAAGTACAATGTATCTTCTTTTATCCGACATATAGAAAGATCAATCTTGNC
ACATTGCTATATACTTGACTGCATTTGTGATGGCCTGTCAGTTTTTGATGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15183.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis