Browse Element(s) Details


Os.11068.1.S1_a_at

Description gb:AB110176.1
DB_XREF= gi:32352149
TID=Os.11068.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11068 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0415C01.11 (P0415C01.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) mRNA for hypothetical protein, complete cds, clone: 13YPG014.
FL= gb:AB110176.1 gb:AK099494.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4069011/11holocarboxylase synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40640Os.38077.1.S1_at11/111+23306806..23310002S1 RNA binding domain PF|00575 containing protein, putative, expressed
LOC_Os01g40640Os.38077.2.S1_x_at9/111+23306806..23310002S1 RNA binding domain PF|00575 containing protein, putative, expressed
LOC_Os01g40640Os.38077.2.S1_at1/111+23306806..23310002S1 RNA binding domain PF|00575 containing protein, putative, expressed
LOC_Os01g40650Os.14549.1.S1_at11/111+23310240..23312635expressed protein
LOC_Os01g40650Os.7579.1.S1_at1/111+23310240..23312635expressed protein
LOC_Os01g40660Os.45941.1.S1_at11/111+23313596..23314735embryo-abundant protein, putative, expressed
LOC_Os01g40670Os.8369.1.S1_at11/111+23315077..23318787single myb histone 1, putative, expressed
LOC_Os01g40680OsAffx.23610.1.S1_at11/111+23319400..23321019pentatricopeptide, putative
LOC_Os01g40690Os.11068.4.S1_x_at11/111+23322899..23325189holocarboxylase synthetase, putative, expressed
LOC_Os01g40690Os.11068.1.S1_a_at11/111+23322899..23325189holocarboxylase synthetase, putative, expressed
LOC_Os01g40700Os.7488.1.S1_s_at11/111+23326953..23329280expressed protein
LOC_Os01g40700Os.41402.1.S1_x_at11/111+23326953..23329280expressed protein
LOC_Os01g40710Os.15183.1.S1_at11/111+23330543..23331858expressed protein
LOC_Os01g40720OsAffx.23612.1.S1_at11/111+23332601..23335789pentatricopeptide, putative
LOC_Os01g40730Os.41397.1.S1_at7/111+23340272..23340787hypothetical protein
LOC_Os01g40730Os.41397.1.S1_x_at3/111+23340272..23340787hypothetical protein
LOC_Os01g40730Os.27284.1.S1_at1/111+23340272..23340787hypothetical protein
LOC_Os01g40740Os.41397.1.S1_x_at3/111+23342355..23343966hypothetical protein
LOC_Os01g40750Os.27284.1.S1_at11/111+23349926..23352964expressed protein
LOC_Os01g40750Os.41397.1.S1_x_at8/111+23349926..23352964expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11068.1.S1_a_at--570--5231Chr01:23323183..23323207 (25 bp)
GAATACTACTGAACTGGATTGTGGT
LOC_Os01g40690
Os.11068.1.S1_a_at--413--6611Chr01:23323167..23323191 (25 bp)
GATTGTGGTGAGATGCTGCATGCAA
LOC_Os01g40690
Os.11068.1.S1_a_at--674--2231Chr01:23323128..23323152 (25 bp)
ACAATACCAGTGTTGTCTCCTGTTG
LOC_Os01g40690
Os.11068.1.S1_a_at--44--9511Chr01:23323113..23323137 (25 bp)
TCTCCTGTTGCTGTATGTTATGTAT
LOC_Os01g40690
Os.11068.1.S1_a_at--866--4731Chr01:23323104..23323128 (25 bp)
GCTGTATGTTATGTATTTTCCTAAA
LOC_Os01g40690
Os.11068.1.S1_a_at--527--2431Chr01:23323082..23323106 (25 bp)
AAAACCTTATCATCTGTGCGGCCTT
LOC_Os01g40690
Os.11068.1.S1_a_at--271--7311Chr01:23323067..23323091 (25 bp)
GTGCGGCCTTGTAGTCACAGATGAA
LOC_Os01g40690
Os.11068.1.S1_a_at--781--7091Chr01:23323054..23323078 (25 bp)
GTCACAGATGAAATGGTTCTCTTTA
LOC_Os01g40690
Os.11068.1.S1_a_at--99--8571Chr01:23323041..23323065 (25 bp)
TGGTTCTCTTTAAGGCTTTTAAGCT
LOC_Os01g40690
Os.11068.1.S1_a_at--955--9531Chr01:23323007..23323031 (25 bp)
TCTATTTTTGTTGAAGCCTGATTGG
LOC_Os01g40690
Os.11068.1.S1_a_at--800--5931Chr01:23322981..23323005 (25 bp)
GAGAAATCAAGTTGTTCGTGGGTTC
LOC_Os01g40690
Target Sequence 
GAATACTACTGAACTGGATTGTGGTGAGATGCTGCATGCAAAACCAGGCAGCAACACAATACCAGTGTTGTCTCCTGTTG
CTGTATGTTATGTATTTTCCTAAAACCTTATCATCTGTGCGGCCTTGTAGTCACAGATGAAATGGTTCTCTTTAAGGCTT
TTAAGCTTTTGTATTTTCTATTTTTGTTGAAGCCTGATTGGAGAGAAATCAAGTTGTTCGTGGGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11068.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis