Browse Element(s) Details


Os.27284.1.S1_at

Description gb:AK063416.1
DB_XREF= gi:32973434
TID=Os.27284.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.27284 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-010-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-B09, full insert sequence.
FL= gb:AK099235.1 gb:AK105022.2 gb:AK063416.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4075011/11expressed protein
LOC_Os01g407301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40690Os.11068.4.S1_x_at11/111+23322899..23325189holocarboxylase synthetase, putative, expressed
LOC_Os01g40690Os.11068.1.S1_a_at11/111+23322899..23325189holocarboxylase synthetase, putative, expressed
LOC_Os01g40700Os.7488.1.S1_s_at11/111+23326953..23329280expressed protein
LOC_Os01g40700Os.41402.1.S1_x_at11/111+23326953..23329280expressed protein
LOC_Os01g40710Os.15183.1.S1_at11/111+23330543..23331858expressed protein
LOC_Os01g40720OsAffx.23612.1.S1_at11/111+23332601..23335789pentatricopeptide, putative
LOC_Os01g40730Os.41397.1.S1_at7/111+23340272..23340787hypothetical protein
LOC_Os01g40730Os.41397.1.S1_x_at3/111+23340272..23340787hypothetical protein
LOC_Os01g40730Os.27284.1.S1_at1/111+23340272..23340787hypothetical protein
LOC_Os01g40740Os.41397.1.S1_x_at3/111+23342355..23343966hypothetical protein
LOC_Os01g40750Os.27284.1.S1_at11/111+23349926..23352964expressed protein
LOC_Os01g40750Os.41397.1.S1_x_at8/111+23349926..23352964expressed protein
LOC_Os01g40760Os.51799.1.S1_at11/111+23357121..23357848expressed protein
LOC_Os01g40770OsAffx.19950.1.S1_at1/111+23359896..23361926Transposable element protein, putative, Retrotrans_gag
LOC_Os01g40780OsAffx.1196.1.S1_at2/111+23362713..23364078hypothetical protein
LOC_Os01g40780OsAffx.1196.1.S1_x_at1/111+23362713..23364078hypothetical protein
LOC_Os01g40790OsAffx.30226.1.S1_at2/111+23375982..23376885hypothetical protein
LOC_Os01g40790OsAffx.30226.1.S1_x_at1/111+23375982..23376885hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27284.1.S1_at--804--1612Chr01:23350372..23350396 (25 bp)
AGCTGTTAATTCTCCCGATGATTCA
LOC_Os01g40750
Os.27284.1.S1_at--1041--7431Chr01:23350301..23350325 (25 bp)
GTGTACCAGCCTATAATAGCTTCTT
LOC_Os01g40750
Os.27284.1.S1_at--599--2511Chr01:23350195..23350219 (25 bp)
AACTAGACCAGTACTTGCATTCAGA
LOC_Os01g40750
Os.27284.1.S1_at--361--9031Chr01:23350168..23350192 (25 bp)
TGCAAATTGCATCCAGGGCCGAGAT
LOC_Os01g40750
Os.27284.1.S1_at--839--6191Chr01:23350138..23350162 (25 bp)
GAGGCACTGTTCACAAGGAGGCTTA
LOC_Os01g40750
Os.27284.1.S1_at--669--771Chr01:23350093..23350117 (25 bp)
ATGTCCATCCATCATTGTGCTCTAG
LOC_Os01g40750
Os.27284.1.S1_at--692--9091Chr01:23350076..23350100 (25 bp)
TGCTCTAGCCTCTAATCCAAACATT
LOC_Os01g40750
Os.27284.1.S1_at--129--3311Chr01:23350040..23350064 (25 bp)
CACAATTTGTGCTTTATGGGCTTAA
LOC_Os01g40750
Os.27284.1.S1_at--1006--791Chr01:23350025..23350049 (25 bp)
ATGGGCTTAATTTTACCTCCATTCT
LOC_Os01g40750
Os.27284.1.S1_at--435--111Chr01:23350005..23350029 (25 bp)
ATTCTCTCGCCCACTAGGGAATATT
LOC_Os01g40750
Os.27284.1.S1_at--653--6771Chr01:23349969..23349993 (25 bp)
GTGTTAGGTCCTCTTTGTTAAAGCT
LOC_Os01g40750
Target Sequence 
AGCTGTTAATTCTCCCGATGATTCAGTCCTGAAGCAATTTCATGTCAGGGTGTTGTTTTCTCCAAAATAATGTGTACCAG
CCTATAATAGCTTCTTTGGGTGAAGGAGAGGAAGTAAATCAGTATAAAAAGCTTGATACAATGTAGTGCTTGTGTTAAGA
TGCTTATCTGGGTAATAAACTAGACCAGTACTTGCATTCAGATTTGCAAATTGCATCCAGGGCCGAGATTGTTGGAGGCA
CTGTTCACAAGGAGGCTTAATCTTTGAAACCTGGATGGGATGTCCATCCATCATTGTGCTCTAGCCTCTAATCCAAACAT
TGATGGATTGTACACAATTTGTGCTTTATGGGCTTAATTTTACCTCCATTCTCTCGCCCACTAGGGAATATTTCTGGTGA
ATAGTGTTAGGTCCTCTTTGTTAAAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27284.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis