Browse Element(s) Details


Os.38077.1.S1_at

Description gb:AK099851.1
DB_XREF= gi:32985060
TID=Os.38077.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38077 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0415C01.7 (P0415C01.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013110C21, full insert sequence.
FL= gb:AK099851.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4064011/11S1 RNA binding domain PF|00575 containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40630Os.11222.1.S1_at11/111+23281831..23285994Lysine Decarboxylase, putative, expressed
LOC_Os01g40630Os.57185.1.S1_at11/111+23281831..23285994Lysine Decarboxylase, putative, expressed
LOC_Os01g40630Os.11222.2.S1_x_at10/111+23281831..23285994Lysine Decarboxylase, putative, expressed
LOC_Os01g40630Os.54477.1.S1_at1/111+23281831..23285994Lysine Decarboxylase, putative, expressed
LOC_Os01g40640Os.38077.1.S1_at11/111+23306806..23310002S1 RNA binding domain PF|00575 containing protein, putative, expressed
LOC_Os01g40640Os.38077.2.S1_x_at9/111+23306806..23310002S1 RNA binding domain PF|00575 containing protein, putative, expressed
LOC_Os01g40640Os.38077.2.S1_at1/111+23306806..23310002S1 RNA binding domain PF|00575 containing protein, putative, expressed
LOC_Os01g40650Os.14549.1.S1_at11/111+23310240..23312635expressed protein
LOC_Os01g40650Os.7579.1.S1_at1/111+23310240..23312635expressed protein
LOC_Os01g40660Os.45941.1.S1_at11/111+23313596..23314735embryo-abundant protein, putative, expressed
LOC_Os01g40670Os.8369.1.S1_at11/111+23315077..23318787single myb histone 1, putative, expressed
LOC_Os01g40680OsAffx.23610.1.S1_at11/111+23319400..23321019pentatricopeptide, putative
LOC_Os01g40690Os.11068.4.S1_x_at11/111+23322899..23325189holocarboxylase synthetase, putative, expressed
LOC_Os01g40690Os.11068.1.S1_a_at11/111+23322899..23325189holocarboxylase synthetase, putative, expressed
LOC_Os01g40700Os.7488.1.S1_s_at11/111+23326953..23329280expressed protein
LOC_Os01g40700Os.41402.1.S1_x_at11/111+23326953..23329280expressed protein
LOC_Os01g40710Os.15183.1.S1_at11/111+23330543..23331858expressed protein
LOC_Os01g40720OsAffx.23612.1.S1_at11/111+23332601..23335789pentatricopeptide, putative

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38077.1.S1_at--123--4891Chr01:23307335..23307359 (25 bp)
GCTTTCAGGGATTACATGTTGTGAG
LOC_Os01g40640
Os.38077.1.S1_at--561--3131Chr01:23307017..23307041 (25 bp)
AATTTTGATGCGCTGTGGACCGAAA
LOC_Os01g40640
Os.38077.1.S1_at--1076--551Chr01:23306969..23306993 (25 bp)
ATCCATTAGTCCAAGTAGCTCCGTG
LOC_Os01g40640
Os.38077.1.S1_at--1015--9971Chr01:23306954..23306978 (25 bp)
TAGCTCCGTGGAGAAAACATCACAT
LOC_Os01g40640
Os.38077.1.S1_at--642--2091Chr01:23306938..23306962 (25 bp)
ACATCACATTTGATAGCATCCACTA
LOC_Os01g40640
Os.38077.1.S1_at--863--10011Chr01:23306925..23306949 (25 bp)
TAGCATCCACTATTTGTACAACTTG
LOC_Os01g40640
Os.38077.1.S1_at--412--3271Chr01:23306907..23306931 (25 bp)
CAACTTGAGTTCACTTGTATTTACT
LOC_Os01g40640
Os.38077.1.S1_at--749--8151Chr01:23306874..23306898 (25 bp)
GGAAACAAGCAACTCAACTACCTGA
LOC_Os01g40640
Os.38077.1.S1_at--762--3731Chr01:23306862..23306886 (25 bp)
CTCAACTACCTGAACGTGCAGCAGT
LOC_Os01g40640
Os.38077.1.S1_at--529--5451Chr01:23306851..23306875 (25 bp)
GAACGTGCAGCAGTAGTCTCTGAAT
LOC_Os01g40640
Os.38077.1.S1_at--571--6751Chr01:23306824..23306846 (23 bp)
GTTCAGATTTGTTATTCAGTTCCTT
LOC_Os01g40640
Target Sequence 
GCTTTCAGGGATTACATGTTGTGAGAACAATNTGGTTGCTGGCTTGCTGCTGAAGAAAAATAGCATATATAAGCAGCTTA
GCATGAAGCATATGAAGTTGAANCTTCATTGGATGACCTGGAGAAATAANGGTTNTTGGTGAGAGCNCAGCNCTTTCCAA
AGCAAANAACCAGCATTNAACGGTTNTNCGAGTAGCAACATGCAGCTNNATNTGGCAACTGCNTCAACAANAGAAGCAGC
AANNANNNNNNTTTNTNGGNGNNTGNCGNACNNNNNNNANNNNNGANGNACTNNNNNNNGANNNTGNCNNTNNTNGGAAA
ATTTTGATGCGCTGTGGACCGAAAATGACACATTTTGTGAATGTTTAATCCATTAGTCCAAGTAGCTCCGTGGAGAAAAC
ATCACATTTGATAGCATCCACTATTTGTACAACTTGAGTTCACTTGTATTTACTATTTCAATGGAAACAAGCAACTCAAC
TACCTGAACGTGCAGCAGTAGTCTCTGAATTTTTGTTCAGATTTGTTATTCAGTTCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38077.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis