Browse Element(s) Details


Os.11222.1.S1_at

Description gb:AK071695.1
DB_XREF= gi:32981718
TID=Os.11222.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11222 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0415C01.3 (P0415C01.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023109F04, full insert sequence.
FL= gb:AK071695.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4063011/11Lysine Decarboxylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40600OsAffx.11412.1.S1_at11/111+23256091..23256966Cell cycle control protein cwf16, putative, expressed
LOC_Os01g40610Os.24549.1.S1_at11/111+23258775..23264034Cell cycle control protein cwf16, putative, expressed
LOC_Os01g40620Os.26711.1.S1_at11/111+23275012..23279035Uncharacterized ACR, COG1565 family protein, expressed
LOC_Os01g40620Os.26711.2.S1_s_at11/111+23275012..23279035Uncharacterized ACR, COG1565 family protein, expressed
LOC_Os01g40620Os.26711.2.S1_x_at11/111+23275012..23279035Uncharacterized ACR, COG1565 family protein, expressed
LOC_Os01g40630Os.11222.1.S1_at11/111+23281831..23285994Lysine Decarboxylase, putative, expressed
LOC_Os01g40630Os.57185.1.S1_at11/111+23281831..23285994Lysine Decarboxylase, putative, expressed
LOC_Os01g40630Os.11222.2.S1_x_at10/111+23281831..23285994Lysine Decarboxylase, putative, expressed
LOC_Os01g40630Os.54477.1.S1_at1/111+23281831..23285994Lysine Decarboxylase, putative, expressed
LOC_Os01g40640Os.38077.1.S1_at11/111+23306806..23310002S1 RNA binding domain PF|00575 containing protein, putative, expressed
LOC_Os01g40640Os.38077.2.S1_x_at9/111+23306806..23310002S1 RNA binding domain PF|00575 containing protein, putative, expressed
LOC_Os01g40640Os.38077.2.S1_at1/111+23306806..23310002S1 RNA binding domain PF|00575 containing protein, putative, expressed
LOC_Os01g40650Os.14549.1.S1_at11/111+23310240..23312635expressed protein
LOC_Os01g40650Os.7579.1.S1_at1/111+23310240..23312635expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0016831molecular_functioncarboxy-lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11222.1.S1_at--581--6351Chr01:23282495..23282519 (25 bp)
GATGCGCGGCGCATTATCATCTCGG
LOC_Os01g40630
Os.11222.1.S1_at--1054--4371Chr01:23282468..23282492 (25 bp)
CCAACTGCCAGGGAGCTAGTTCTGA
LOC_Os01g40630
Os.11222.1.S1_at--422--9651Chr01:23282197..23282221 (25 bp)
TAACCGGCGGACGACGATACCTTCT
LOC_Os01g40630
Os.11222.1.S1_at--1028--5411Chr01:23282163..23282187 (25 bp)
GAAGCCGAATATGATCCTGGAGGAA
LOC_Os01g40630
Os.11222.1.S1_at--46--1271Chr01:23282093..23282117 (25 bp)
AGATTTAGCCAAAGGCGGCCCCTAG
LOC_Os01g40630
Os.11222.1.S1_at--856--7691Chr01:23282065..23282089 (25 bp)
GGGTCTGCCGATTTGTTGTTTTGGC
LOC_Os01g40630
Os.11222.1.S1_at--90--3811Chr01:23281973..23281997 (25 bp)
CTCCCTCCTCACTAGCTAGAAGAAG
LOC_Os01g40630
Os.11222.1.S1_at--1122--1531Chr01:23281919..23281943 (25 bp)
AGCATCTGTCTATCTTGATCTTCTC
LOC_Os01g40630
Os.11222.1.S1_at--346--8851Chr01:23281904..23281928 (25 bp)
TGATCTTCTCCATATGCCTGTGCAA
LOC_Os01g40630
Os.11222.1.S1_at--592--8671Chr01:23281877..23281901 (25 bp)
TGTGTCCCCTTGTTTGATCCGATTC
LOC_Os01g40630
Os.11222.1.S1_at--1074--6851Chr01:23281866..23281890 (25 bp)
GTTTGATCCGATTCTGCACTGAAAT
LOC_Os01g40630
Target Sequence 
GATGCGCGGCGCATTATCATCTCGGCTCCAACTGCCAGGGAGCTAGTTCTGAAGCTTGAGGAGTATGTTCCCGAGTACGA
GGTCGGCTTGGTTTGGGACGATCAGATGCCGCACAGCTTCGCGCCTGACCTCGAGACCAGGATCACCTCATCCTGATCTC
TCGGCTCTGGCCCTATTCTTACCCAAGNTTCTAACCGGCGGACGACGATACCTTCTTCTCGTGCCGAAGCCGAATATGAT
CCTGGAGGAAGTTTGTTTTTCTCAGCCAGGGGAAAGTAACATCCACTAACCGAAAAGATTTAGCCAAAGGCGGCCCCTAG
CTCGGGTCTGCCGATTTGTTGTTTTGGCAAAATATGTCAATTGGGACAGTATTTAGCATTAGCAGTGCCTCCTCNNNAAT
GCTGTTCTTTTGGCCCCCCTCCCTCCTCACTAGCTAGAAGAAGGAATATATGTATATGCAAGTAATATTAGTAGCATCTG
TCTATCTTGATCTTCTCCATATGCCTGTGCAATCTGTGTCCCCTTGTTTGATCCGATTCTGCACTGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11222.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis