Browse Element(s) Details


Os.24549.1.S1_at

Description gb:AK066951.1
DB_XREF= gi:32976969
TID=Os.24549.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24549 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013059D18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013090C12, full insert sequence.
FL= gb:AK071911.1 gb:AK066951.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4061011/11Cell cycle control protein cwf16, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40560OsAffx.21410.1.S1_x_at11/111+23233291..23234659SPFH domain/Band 7 family protein
LOC_Os01g40570Os.8309.1.S1_at10/111+23235138..23237522Outer plastidial membrane protein porin, putative, expressed
LOC_Os01g40580Os.31431.1.S1_at11/111+23241450..23243021hypersensitive-induced response protein, putative, expressed
LOC_Os01g40590Os.5667.1.S1_at11/111+23245301..23250709Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os01g40600OsAffx.11412.1.S1_at11/111+23256091..23256966Cell cycle control protein cwf16, putative, expressed
LOC_Os01g40610Os.24549.1.S1_at11/111+23258775..23264034Cell cycle control protein cwf16, putative, expressed
LOC_Os01g40620Os.26711.1.S1_at11/111+23275012..23279035Uncharacterized ACR, COG1565 family protein, expressed
LOC_Os01g40620Os.26711.2.S1_s_at11/111+23275012..23279035Uncharacterized ACR, COG1565 family protein, expressed
LOC_Os01g40620Os.26711.2.S1_x_at11/111+23275012..23279035Uncharacterized ACR, COG1565 family protein, expressed
LOC_Os01g40630Os.11222.1.S1_at11/111+23281831..23285994Lysine Decarboxylase, putative, expressed
LOC_Os01g40630Os.57185.1.S1_at11/111+23281831..23285994Lysine Decarboxylase, putative, expressed
LOC_Os01g40630Os.11222.2.S1_x_at10/111+23281831..23285994Lysine Decarboxylase, putative, expressed
LOC_Os01g40630Os.54477.1.S1_at1/111+23281831..23285994Lysine Decarboxylase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24549.1.S1_at--809--8891Chr01:23263639..23263663 (25 bp)
TGAGTGATGACTGCGTGGCTGCTTC
LOC_Os01g40610
Os.24549.1.S1_at--768--4911Chr01:23263659..23263683 (25 bp)
GCTTCGTGCCGTAAGCCCGTAACAA
LOC_Os01g40610
Os.24549.1.S1_at--493--9811Chr01:23263678..23263702 (25 bp)
TAACAACCGTAACCGCGAATCGCCA
LOC_Os01g40610
Os.24549.1.S1_at--380--1711Chr01:23263702..23263726 (25 bp)
ACCAACTGCTGTGGCATTGGTTGCA
LOC_Os01g40610
Os.24549.1.S1_at--667--1631Chr01:23263726..23263750 (25 bp)
AGCGGATGACAATTCCACTCACAGA
LOC_Os01g40610
Os.24549.1.S1_at--226--551Chr01:23263788..23263812 (25 bp)
ATCCCTGAGGATCTATTGTTGCCAC
LOC_Os01g40610
Os.24549.1.S1_at--442--6671Chr01:23263805..23263829 (25 bp)
GTTGCCACAAATCTGAATCCCGGGA
LOC_Os01g40610
Os.24549.1.S1_at--361--3611Chr01:23263877..23263901 (25 bp)
CATTGTCCAGGCGAGATTTATACGT
LOC_Os01g40610
Os.24549.1.S1_at--363--6851Chr01:23263963..23263987 (25 bp)
GTTTGTTGACGTTGGGTTCTTGCAC
LOC_Os01g40610
Os.24549.1.S1_at--536--10551Chr01:23263979..23264003 (25 bp)
TTCTTGCACCAATCCTTCATTTCTA
LOC_Os01g40610
Os.24549.1.S1_at--808--9591Chr01:23263995..23264019 (25 bp)
TCATTTCTACGCCTAGCTTATACAC
LOC_Os01g40610
Target Sequence 
TGAGTGATGACTGCGTGGCTGCTTCGTGCCGTAAGCCCGTAACAACCGTAACCGCGAATCGCCACCAACTGCTGTGGCAT
TGGTTGCAGCGGATGACAATTCCACTCACAGAAGAAGAATATTACGTTGTNCTAACATTGGATAACCAGATCCCTGAGGA
TCTATTGTTGCCACAAATCTGAATCCCGGGAATTCATTGGTTAAGTATATACAGTNCTTCAAAATCTGTGGCTGCNAACA
TTGTCCAGGCGAGATTTATACGTGTGTGGTTTGTTGCTGAATGCCTGAAGAGATCAAAAGTCTTGTAAAATTGACAGGGA
AGATGTTTGTTGACGTTGGGTTCTTGCACCAATCCTTCATTTCTACGCCTAGCTTATACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24549.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis