Browse Element(s) Details


Os.26711.2.S1_x_at

Description gb:NM_192558.1
DB_XREF= gi:34912199
GEN=P0415C01.2
TID=Os.26711.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.26711 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0415C01.2 (P0415C01.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0415C01.2 (P0415C01.2), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4062011/11Uncharacterized ACR, COG1565 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40590Os.5667.1.S1_at11/111+23245301..23250709Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os01g40600OsAffx.11412.1.S1_at11/111+23256091..23256966Cell cycle control protein cwf16, putative, expressed
LOC_Os01g40610Os.24549.1.S1_at11/111+23258775..23264034Cell cycle control protein cwf16, putative, expressed
LOC_Os01g40620Os.26711.1.S1_at11/111+23275012..23279035Uncharacterized ACR, COG1565 family protein, expressed
LOC_Os01g40620Os.26711.2.S1_s_at11/111+23275012..23279035Uncharacterized ACR, COG1565 family protein, expressed
LOC_Os01g40620Os.26711.2.S1_x_at11/111+23275012..23279035Uncharacterized ACR, COG1565 family protein, expressed
LOC_Os01g40630Os.11222.1.S1_at11/111+23281831..23285994Lysine Decarboxylase, putative, expressed
LOC_Os01g40630Os.57185.1.S1_at11/111+23281831..23285994Lysine Decarboxylase, putative, expressed
LOC_Os01g40630Os.11222.2.S1_x_at10/111+23281831..23285994Lysine Decarboxylase, putative, expressed
LOC_Os01g40630Os.54477.1.S1_at1/111+23281831..23285994Lysine Decarboxylase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26711.2.S1_x_at--1040--9171Chr01:23277225..23277249 (25 bp)
TGCCTTGCCAATTCATCAATTTCAG
LOC_Os01g40620
Os.26711.2.S1_x_at--506--2351Chr01:23277351..23277375 (25 bp)
AAAGCATCACGTGGCTGGTGCGAGA
LOC_Os01g40620
Os.26711.2.S1_x_at--480--7711Chr01:23277641..23277665 (25 bp)
GGGTGCACTTATCATTGACTACGGA
LOC_Os01g40620
Os.26711.2.S1_x_at--888--8831Chr01:23277683..23277981 (25 bp)
TGATAGTCTTCAGGCAATCCGCAAG
LOC_Os01g40620
Os.26711.2.S1_x_at--446--6471Chr01:23278003..23278027 (25 bp)
GATAACCCTGGTTCAGCCGATCTGA
LOC_Os01g40620
Os.26711.2.S1_x_at--1111--4491Chr01:23278018..23278042 (25 bp)
GCCGATCTGAGTGCTTATGTTGATT
LOC_Os01g40620
Os.26711.2.S1_x_at--553--171Chr01:23278040..23278064 (25 bp)
ATTTTGCATCAATCAGACACTCCGC
LOC_Os01g40620
Os.26711.2.S1_x_at--298--5631Chr01:23278055..23278078 (24 bp)
GACACTCCGCTAAGGAAGCTTCAGA
LOC_Os01g40620
Os.26711.2.S1_x_at--615--671Chr01:23278191..23278215 (25 bp)
ATGACTCAATCCCAGTTCTTGGGCT
LOC_Os01g40620
Os.26711.2.S1_x_at--389--10532Chr06:23678311..23678400 (24 bp)
TTCTTGGGCTCTCTTGGTATAAACT
NONE
Os.26711.2.S1_x_at--529--4271Chr01:23278244..23278268 (25 bp)
CCTGCTCCAAAACTGTGCTACTGAT
LOC_Os01g40620
Target Sequence 
TGCCTTGCCAATTCATCAATTTCAGAAAGCATCACGTGGCTGGTGCGAGAAGATGCGGTGCGGTTGGGCTAGTTCTGAGG
AACTTGAGAAAGTTGAGCATATTGAAGTCTGCCCGAAAGCAATGGAGATCACTGAACAGATTGCAGATAGAATTAGCTCG
GATGGAGGGGGTGCACTTATCATTGACTACGGAAAAGATGGAATAGTCTCTGATAGTCTTCAGGCAATCCGCAAGCACAA
GTTTGTACACATATTGGATAACCCTGGTTCAGCCGATCTGAGTGCTTATGTTGATTTTGCATCAATCAGACACTCCGCTA
AGGAAGCTTCAGATGATATTTCTGTTCATGGGCCAATGACTCAATCCCAGTTCTTGGGCTCTCTTGGTATAAACTTCCGT
GTGGAAGCCCTGCTCCAAAACTGTGCTACTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26711.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis