Browse Element(s) Details


Os.26711.1.S1_at

Description gb:AK072399.1
DB_XREF= gi:32982422
TID=Os.26711.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26711 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0415C01.2 (P0415C01.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023080H11, full insert sequence.
FL= gb:AK072399.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4062011/11Uncharacterized ACR, COG1565 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40590Os.5667.1.S1_at11/111+23245301..23250709Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os01g40600OsAffx.11412.1.S1_at11/111+23256091..23256966Cell cycle control protein cwf16, putative, expressed
LOC_Os01g40610Os.24549.1.S1_at11/111+23258775..23264034Cell cycle control protein cwf16, putative, expressed
LOC_Os01g40620Os.26711.1.S1_at11/111+23275012..23279035Uncharacterized ACR, COG1565 family protein, expressed
LOC_Os01g40620Os.26711.2.S1_s_at11/111+23275012..23279035Uncharacterized ACR, COG1565 family protein, expressed
LOC_Os01g40620Os.26711.2.S1_x_at11/111+23275012..23279035Uncharacterized ACR, COG1565 family protein, expressed
LOC_Os01g40630Os.11222.1.S1_at11/111+23281831..23285994Lysine Decarboxylase, putative, expressed
LOC_Os01g40630Os.57185.1.S1_at11/111+23281831..23285994Lysine Decarboxylase, putative, expressed
LOC_Os01g40630Os.11222.2.S1_x_at10/111+23281831..23285994Lysine Decarboxylase, putative, expressed
LOC_Os01g40630Os.54477.1.S1_at1/111+23281831..23285994Lysine Decarboxylase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26711.1.S1_at--185--2171Chr01:23278569..23278593 (25 bp)
ACACCATACATGGACTCGTTCAGAT
LOC_Os01g40620
Os.26711.1.S1_at--882--1971Chr01:23278623..23278647 (25 bp)
ACTGCTTTGTACTTGCTGCACGGAA
LOC_Os01g40620
Os.26711.1.S1_at--956--7171Chr01:23278655..23278679 (25 bp)
GTCGGTTTGACATTCCTGTTACTAC
LOC_Os01g40620
Os.26711.1.S1_at--1159--9891Chr01:23278674..23278698 (25 bp)
TACTACATAGGTTTCTTCGTGCAAG
LOC_Os01g40620
Os.26711.1.S1_at--503--4671Chr01:23278792..23278816 (25 bp)
GCGGAGTCAGCTGTTTAGACCTTGA
LOC_Os01g40620
Os.26711.1.S1_at--554--631Chr01:23278823..23278847 (25 bp)
ATGCATTACGCATTTGTGCCTCTGT
LOC_Os01g40620
Os.26711.1.S1_at--460--791Chr01:23278855..23278879 (25 bp)
ATGTGTTCCAGTTCACTGCTTCTAA
LOC_Os01g40620
Os.26711.1.S1_at--344--7431Chr01:23278914..23278938 (25 bp)
GGTTTACCCGTTTCAAAAGCATGCT
LOC_Os01g40620
Os.26711.1.S1_at--721--2711Chr01:23278930..23278954 (25 bp)
AAGCATGCTTATCTTATGTCATTCG
LOC_Os01g40620
Os.26711.1.S1_at--81--771Chr01:23278945..23278969 (25 bp)
ATGTCATTCGTGCAAAGCCTTGTAT
LOC_Os01g40620
Os.26711.1.S1_at--214--10791Chr01:23278972..23278996 (25 bp)
TTGTATCCTTGTATGCCACCAATCA
LOC_Os01g40620
Target Sequence 
ACACCATACATGGACTCGTTCAGATGCGTGCTGTTTTTTTTATAAGAAGTGTGTACTGCTTTGTACTTGCTGCACGGAAA
GAATTGGTCGGTTTGACATTCCTGTTACTACATAGGTTTCTTCGTGCAAGATGGGATAGTGGTTGTATCAAAGTTTCTGG
TACAATTCCTGAATTTCTACTAGTGTTCANCCTTGAGATACAAGTTATGCACATTGTTTAGCTGCGGAGTCAGCTGTTTA
GACCTTGAGATGTCATGCATTACGCATTTGTGCCTCTGTTTGGTATATGTGTTCCAGTTCACTGCTTCTAAAGTCTAAAG
AGGCTATAGATTAGTATTTAAAACCGGTTTACCCGTTTCAAAAGCATGCTTATCTTATGTCATTCGTGCAAAGCCTTGTA
TGATTGTATCCTTGTATGCCACCAATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26711.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis