Browse Element(s) Details


Os.57185.1.S1_at

Description gb:AK111103.1
DB_XREF= gi:32996312
TID=Os.57185.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57185 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-175-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-H03, full insert sequence.
FL= gb:AK111103.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4063011/11Lysine Decarboxylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40600OsAffx.11412.1.S1_at11/111+23256091..23256966Cell cycle control protein cwf16, putative, expressed
LOC_Os01g40610Os.24549.1.S1_at11/111+23258775..23264034Cell cycle control protein cwf16, putative, expressed
LOC_Os01g40620Os.26711.1.S1_at11/111+23275012..23279035Uncharacterized ACR, COG1565 family protein, expressed
LOC_Os01g40620Os.26711.2.S1_s_at11/111+23275012..23279035Uncharacterized ACR, COG1565 family protein, expressed
LOC_Os01g40620Os.26711.2.S1_x_at11/111+23275012..23279035Uncharacterized ACR, COG1565 family protein, expressed
LOC_Os01g40630Os.11222.1.S1_at11/111+23281831..23285994Lysine Decarboxylase, putative, expressed
LOC_Os01g40630Os.57185.1.S1_at11/111+23281831..23285994Lysine Decarboxylase, putative, expressed
LOC_Os01g40630Os.11222.2.S1_x_at10/111+23281831..23285994Lysine Decarboxylase, putative, expressed
LOC_Os01g40630Os.54477.1.S1_at1/111+23281831..23285994Lysine Decarboxylase, putative, expressed
LOC_Os01g40640Os.38077.1.S1_at11/111+23306806..23310002S1 RNA binding domain PF|00575 containing protein, putative, expressed
LOC_Os01g40640Os.38077.2.S1_x_at9/111+23306806..23310002S1 RNA binding domain PF|00575 containing protein, putative, expressed
LOC_Os01g40640Os.38077.2.S1_at1/111+23306806..23310002S1 RNA binding domain PF|00575 containing protein, putative, expressed
LOC_Os01g40650Os.14549.1.S1_at11/111+23310240..23312635expressed protein
LOC_Os01g40650Os.7579.1.S1_at1/111+23310240..23312635expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0016831molecular_functioncarboxy-lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57185.1.S1_at--461--3211Chr01:23285671..23285695 (25 bp)
CAAGGAACTGGTCAGGATTCTTCTT
LOC_Os01g40630
Os.57185.1.S1_at--568--8831Chr01:23285604..23285628 (25 bp)
TGATTTGATTGATTGTCCTTTCTCC
LOC_Os01g40630
Os.57185.1.S1_at--272--3191Chr01:23285548..23285572 (25 bp)
CAATCTTTTCATTTTCTACTTTTCT
LOC_Os01g40630
Os.57185.1.S1_at--92--8611Chr01:23285433..23285457 (25 bp)
TGGTGCGCGTCCCTAGTATCCTAGG
LOC_Os01g40630
Os.57185.1.S1_at--1138--6891Chr01:23285418..23285442 (25 bp)
GTATCCTAGGCAGCTATAGTAGTAG
LOC_Os01g40630
Os.57185.1.S1_at--812--1651Chr01:23285371..23285395 (25 bp)
ACCAATCATGATTGCTGGCGAGCGC
LOC_Os01g40630
Os.57185.1.S1_at--879--4671Chr01:23285348..23285372 (25 bp)
GCGGTGACCTCAGTTGCGTCCCGAA
LOC_Os01g40630
Os.57185.1.S1_at--208--3431Chr01:23285338..23285362 (25 bp)
CAGTTGCGTCCCGAACGGAACAACA
LOC_Os01g40630
Os.57185.1.S1_at--995--10271Chr01:23285302..23285326 (25 bp)
TTTGCATGCATCAAAACGCCACCAC
LOC_Os01g40630
Os.57185.1.S1_at--938--7931Chr01:23285249..23285273 (25 bp)
GGATTTTTCTTGTCGACTCAAGAGA
LOC_Os01g40630
Os.57185.1.S1_at--880--10351Chr01:23285176..23285200 (25 bp)
TTTTTGGTTCGTGTTGGTGCAGGTC
LOC_Os01g40630
Target Sequence 
CAAGGAACTGGTCAGGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTTGATTTGATTGAT
TGTCCTTTCTCCCTCCCTCCCTCCCAAATCCGTCATAAAAATCCAATCTTTTCATTTTCTACTTTTCTTTCTTTCTTCCC
CCTCCGGGCTTCGCCGGCCGGCTCGCCGGCGGCGGCGGCGGCGACCGACTCTCCGGCTCGCCGTGGCCGTTTCTCTCTTG
GTGCGCGTCCCTAGTATCCTAGGCAGCTATAGTAGTAGGTTTTCTAGATGAGCAAACAAAACCAATCATGATTGCTGGCG
AGCGCGGTGACCTCAGTTGCGTCCCGAACGGAACAACAATCTTACAATTTTTGCATGCATCAAAACGCCACCACCATCTC
CTCCCTCTCTCCCCCACCTTTTGGATTTTTCTTGTCGACTCAAGAGAGTAGAGAGAGGTTGATTGGTTTCTTGTTTTTTT
ACATTTCCCCTTTTGTTTTTGGTTCGTGTTGGTGCAGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57185.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis