Browse Element(s) Details


Os.11222.2.S1_x_at

Description gb:NM_192559.1
DB_XREF= gi:34912201
GEN=P0415C01.3
TID=Os.11222.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.11222 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0415C01.3 (P0415C01.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0415C01.3 (P0415C01.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4063010/11Lysine Decarboxylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40600OsAffx.11412.1.S1_at11/111+23256091..23256966Cell cycle control protein cwf16, putative, expressed
LOC_Os01g40610Os.24549.1.S1_at11/111+23258775..23264034Cell cycle control protein cwf16, putative, expressed
LOC_Os01g40620Os.26711.1.S1_at11/111+23275012..23279035Uncharacterized ACR, COG1565 family protein, expressed
LOC_Os01g40620Os.26711.2.S1_s_at11/111+23275012..23279035Uncharacterized ACR, COG1565 family protein, expressed
LOC_Os01g40620Os.26711.2.S1_x_at11/111+23275012..23279035Uncharacterized ACR, COG1565 family protein, expressed
LOC_Os01g40630Os.11222.1.S1_at11/111+23281831..23285994Lysine Decarboxylase, putative, expressed
LOC_Os01g40630Os.57185.1.S1_at11/111+23281831..23285994Lysine Decarboxylase, putative, expressed
LOC_Os01g40630Os.11222.2.S1_x_at10/111+23281831..23285994Lysine Decarboxylase, putative, expressed
LOC_Os01g40630Os.54477.1.S1_at1/111+23281831..23285994Lysine Decarboxylase, putative, expressed
LOC_Os01g40640Os.38077.1.S1_at11/111+23306806..23310002S1 RNA binding domain PF|00575 containing protein, putative, expressed
LOC_Os01g40640Os.38077.2.S1_x_at9/111+23306806..23310002S1 RNA binding domain PF|00575 containing protein, putative, expressed
LOC_Os01g40640Os.38077.2.S1_at1/111+23306806..23310002S1 RNA binding domain PF|00575 containing protein, putative, expressed
LOC_Os01g40650Os.14549.1.S1_at11/111+23310240..23312635expressed protein
LOC_Os01g40650Os.7579.1.S1_at1/111+23310240..23312635expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0016831molecular_functioncarboxy-lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11222.2.S1_x_at--234--10531Chr01:23285748..23285772 (25 bp)
TTCAGGCGGATCTGCGTGTACTGCG
LOC_Os01g40630
Os.11222.2.S1_x_at--363--551Chr01:23284423..23284447 (25 bp)
ATCCCGAAATCCTTGATGCCCAGAG
LOC_Os01g40630
Os.11222.2.S1_x_at--141--10031Chr01:23283576..23283600 (25 bp)
TAGAGCGGTCTCTGGCATGCACGAG
LOC_Os01g40630
Os.11222.2.S1_x_at--1065--5571Chr01:23283542..23283566 (25 bp)
GAAATGGCCCGGTTTGCTGATGCGT
LOC_Os01g40630
Os.11222.2.S1_x_at--49--9131Chr01:23283528..23283552 (25 bp)
TGCTGATGCGTTCATTGCACTGCCT
LOC_Os01g40630
Os.11222.2.S1_x_at--258--9191Chr01:23283407..23283532 (25 bp)
TGCCTGGCGGCTACGGGACTCTTGA
LOC_Os01g40630
Os.11222.2.S1_x_at--760--6671Chr01:23283379..23283403 (25 bp)
GTTGCTTGAGGTCATCACCTGGGCC
LOC_Os01g40630
Os.11222.2.S1_x_at--345--8651Chr01:23283360..23283384 (25 bp)
TGGGCCCAACTAGGAATCCACAAGA
LOC_Os01g40630
Os.11222.2.S1_x_at--982--3291NONE
CACAAGAAGCCGGAGTATGTTCCCG
NONE
Os.11222.2.S1_x_at--930--711Chr01:23282324..23282348 (25 bp)
ATGTTCCCGAGTACGAGGTCGGCTT
LOC_Os01g40630
Os.11222.2.S1_x_at--397--6851Chr01:23282298..23282322 (25 bp)
GTTTGGGACGATCAGATGCCGCACA
LOC_Os01g40630
Target Sequence 
TTCAGGCGGATCTGCGTGTACTGCGGCAGCGCCAAGGGGAGGAAGGCCAGCTACCAGGACGCCGCCGTCGAGCTCGGCAA
GGAACTGGTCGAGAGGGGCATAGACCTGGTCTACGGCGGTGGCTCCATCGGCCTCATGGGCCTCGTCTCCCACGCTGTTC
ACGACGGTGGTCGCCATGTCATTGGGGTCATCCCGAAATCCTTGATGCCCAGAGAGGTCACTGGTGAGCCTGTTGGTGAA
GTTAGAGCGGTCTCTGGCATGCACGAGAGGAAGGCTGAAATGGCCCGGTTTGCTGATGCGTTCATTGCACTGCCTGGCGG
CTACGGGACTCTTGAGGAGTTGCTTGAGGTCATCACCTGGGCCCAACTAGGAATCCACAAGAAGCCGGAGTATGTTCCCG
AGTACGAGGTCGGCTTGGTTTGGGACGATCAGATGCCGCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11222.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis