Browse Element(s) Details


Os.51809.1.S1_at

Description gb:AK063805.1
DB_XREF= gi:32973823
TID=Os.51809.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.51809 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-121-G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-G02, full insert sequence.
FL= gb:AK063805.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0678010/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06740OsAffx.7024.1.S1_at10/1111+3286717..3289455SNELIPTRC, putative, expressed
LOC_Os11g06740Os.48459.1.A1_at5/1111+3286717..3289455SNELIPTRC, putative, expressed
LOC_Os11g06750Os.22696.1.S1_at11/1111+3290058..329292760S ribosomal protein L3, putative, expressed
LOC_Os11g06750Os.22696.2.S1_x_at9/1111+3290058..329292760S ribosomal protein L3, putative, expressed
LOC_Os11g06760Os.12174.1.S1_at11/1111+3293877..3299232expressed protein
LOC_Os11g06770OsAffx.7025.1.S1_at11/1111+3303434..3305854AP2 domain containing protein, expressed
LOC_Os11g06780Os.51809.1.S1_at10/1111+3309986..3312193Protein kinase domain containing protein, expressed
LOC_Os11g06780Os.46117.1.S1_at1/1111+3309986..3312193Protein kinase domain containing protein, expressed
LOC_Os11g06790Os.46500.1.S1_at5/1111+3323505..3324213transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g06800Os.46500.2.S1_at7/1111+3326426..3327298hypothetical protein
LOC_Os11g06810Os.10074.1.S1_at11/1111+3328352..3334865expressed protein
LOC_Os11g06810Os.5907.1.A1_at1/1111+3328352..3334865expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009556biological_processmicrosporogenesis
GO:0010234biological_processtapetal cell fate specification
GO:0016020cellular_componentmembrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51809.1.S1_at--923--4371Chr11:3311642..3311666 (25 bp)
CCAAGCTGGCCGGTGAAGATCAACA
LOC_Os11g06780
Os.51809.1.S1_at--435--2211Chr11:3311715..3311739 (25 bp)
ACAAGGGCCAGGCATTGGAGATCCT
LOC_Os11g06780
Os.51809.1.S1_at--1135--291Chr11:3311795..3311819 (25 bp)
ATAGCGTATTTGGATGTGGCACGGC
LOC_Os11g06780
Os.51809.1.S1_at--906--6171Chr11:3311828..3311852 (25 bp)
GAGGAGAGCCCTAAGCACCGGCCAT
LOC_Os11g06780
Os.51809.1.S1_at--1108--6411Chr11:3311884..3311908 (25 bp)
GATCTAAACCTGATTGAGAGCACAT
LOC_Os11g06780
Os.51809.1.S1_at--1108--1591Chr11:3311928..3311952 (25 bp)
AGCTGTAGCCATGTGAAGTTCAATC
LOC_Os11g06780
Os.51809.1.S1_at--324--9711Chr11:3311951..3311975 (25 bp)
TCAAACTTCCGGTTAGATTTTCTGT
LOC_Os11g06780
Os.51809.1.S1_at--27--6551Chr11:3311966..3311990 (25 bp)
GATTTTCTGTCTAGTTTGGGCTGAT
LOC_Os11g06780
Os.51809.1.S1_at--408--591Chr11:3312065..3312089 (25 bp)
ATGCCAATGCCTATCGTTGTATGGT
LOC_Os11g06780
Os.51809.1.S1_at--867--791Chr11:3312127..3312151 (25 bp)
ATGGGTAGCGAATAGCTTGCAGCAT
LOC_Os11g06780
Os.51809.1.S1_at--292--7311Chr11:3312172..3312195 (24 bp)
GTGCGGATTTTGTCATCCGTTTAAA
NONE
Target Sequence 
CCAAGCTGGCCGGTGAAGATCAACATGAAAGGGAAAGAGGTAGAGATGCTGAAATGGGCTAGGGATAAGGTAGACAAGGG
CCAGGCATTGGAGATCCTGGACCGTCAGATGGGGATCCAATGGGAAGGGAGAGAGGCTGACCAAGATGAAATGATAGCGT
ATTTGGATGTGGCACGGCGTTGCACGGAGGAGAGCCCTAAGCACCGGCCATCCATGGAAGAAGTGGTTGAGATGCTCAAC
AAGATCTAAACCTGATTGAGAGCACATAGATTGAAATGCTTTAGATAGCTGTAGCCATGTGAAGTTCAATCAAACTTCCG
GTTAGATTTTCTGTCTAGTTTGGGCTGATTATGATGCAAGATCATACTTTGGAATTGGGAATTAATTATAAACCATGGTG
AGTATGAATGTTGAAGGGCAAACATGCCAATGCCTATCGTTGTATGGTAATGTTTGTAACTTGGTGATGAAAAGCTGATG
TATACATGGGTAGCGAATAGCTTGCAGCATTGCAATAATGTATAAATATTGTGCGGATTTTGTCATCCGTTTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51809.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis