Browse Element(s) Details


Os.51824.1.S1_at

Description gb:AK063884.1
DB_XREF= gi:32973902
TID=Os.51824.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51824 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033063M10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-122-F11, full insert sequence.
FL= gb:AK099373.1 gb:AK063884.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1529010/1150S ribosomal protein L18, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15240NANA1+8529014..8529721hypothetical protein
LOC_Os01g15250OsAffx.23257.1.S1_at11/111+8532477..8533844expressed protein
LOC_Os01g15260OsAffx.27867.1.S1_s_at11/111+8537445..8541331Dynein light chain 1, cytoplasmic, putative, expressed
LOC_Os01g15260Os.10666.1.S1_at9/111+8537445..8541331Dynein light chain 1, cytoplasmic, putative, expressed
LOC_Os01g15270Os.37869.2.S1_a_at11/111+8542802..8543674expressed protein
LOC_Os01g15270Os.40139.1.A1_x_at3/111+8542802..8543674expressed protein
LOC_Os01g15280Os.20602.2.S1_x_at11/111+8547101..8549448hAT family dimerisation domain containing protein, expressed
LOC_Os01g15290Os.51824.1.S1_at10/111+8552091..855394850S ribosomal protein L18, putative, expressed
LOC_Os01g15300Os.49825.1.S1_at11/111+8557427..8566431zinc finger helicase family protein, putative, expressed
LOC_Os01g15300Os.197.2.S1_x_at11/111+8557427..8566431zinc finger helicase family protein, putative, expressed
LOC_Os01g15310Os.197.1.S1_a_at9/111+8567682..8571357U6 snRNA-associated Sm-like protein LSm4, putative, expressed
LOC_Os01g15320Os.10662.1.S1_at11/111+8574045..8574725Rapid ALkalinization Factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51824.1.S1_at--235--8651NONE
TGGGCACACGCACAGAGAGATCCTA
NONE
Os.51824.1.S1_at--464--571Chr01:8552637..8552661 (25 bp)
ATCCTAGCAACTATGGTGATCCCTC
LOC_Os01g15290
Os.51824.1.S1_at--776--811Chr01:8552625..8552649 (25 bp)
ATGGTGATCCCTCCACCGGAAAGGG
LOC_Os01g15290
Os.51824.1.S1_at--1073--2311Chr01:8552606..8552630 (25 bp)
AAAGGGCGGCTAGGATCACGCGCTT
LOC_Os01g15290
Os.51824.1.S1_at--74--2671Chr01:8552577..8552601 (25 bp)
AAGCCCTACCTTCTGAGGATGCATT
LOC_Os01g15290
Os.51824.1.S1_at--160--7991Chr01:8552561..8552585 (25 bp)
GGATGCATTTCTCGAACAAGTATGT
LOC_Os01g15290
Os.51824.1.S1_at--932--10091Chr01:8552541..8552565 (25 bp)
TATGTATCCGCTCAGGTGGTTCACA
LOC_Os01g15290
Os.51824.1.S1_at--796--7111Chr01:8552331..8552355 (25 bp)
GTCAGGGCTGTCATTGACTCTGTTA
LOC_Os01g15290
Os.51824.1.S1_at--746--8031Chr01:8552298..8552322 (25 bp)
GGAGTCAAGCTGTTGTAGTCTCTAA
LOC_Os01g15290
Os.51824.1.S1_at--96--2711Chr01:8552243..8552267 (25 bp)
AAGCTTGTTCCTCTGAATCTCAGGC
LOC_Os01g15290
Os.51824.1.S1_at--756--131Chr01:8552126..8552150 (25 bp)
ATTTTGTACTATTGACTACTGGGAC
LOC_Os01g15290
Target Sequence 
TGGGCACACGCACAGAGAGATCCTAGCAACTATGGTGATCCCTCCACCGGAAAGGGCGGCTAGGATCACGCGCTTTCTGA
AGCCCTACCTTCTGAGGATGCATTTCTCGAACAAGTATGTATCCGCTCAGGTGGTTCACACCCCAACGGCGACGGTCGCC
TGTTCCGCGAGCTCGCAGGAGAAGCTGCTGAGGCCGAACATGGAGTCCACTCGCGATGTCGCTGCCGCTGCCAAGATCGG
TAAGCTGCTCGGCGAGCGGCTGCTGCAGAAGGGCATACCCGCTGTGTGCATCCACATGAAGAGAGAGCAGAAGTACCATG
GGAAGGTCAGGGCTGTCATTGACTCTGTTAGAGAAGCTGGAGTCAAGCTGTTGTAGTCTCTAAAACAGTAGAATCTTTTA
TTAAAATTTCTGCAAGCTTGTTCCTCTGAATCTCAGGCAAAATCTGAAAGATGTCGGATCAGACAGGAAATTTTCATTTC
GGTATTGAGGGCTAGATGGCCTATGTGGAGATGTTCCTGGTGAATAAAGGATTTTGTACTATTGACTACTGGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51824.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis