Browse Element(s) Details


Os.51840.1.S1_at

Description gb:AK063997.1
DB_XREF= gi:32974015
TID=Os.51840.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51840 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-124-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-F01, full insert sequence.
FL= gb:AK063997.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2336011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23340Os.39238.1.A1_at11/119+13854139..13855577expressed protein
LOC_Os09g23340OsAffx.29984.1.S1_s_at10/119+13854139..13855577expressed protein
LOC_Os09g23340OsAffx.29984.1.S1_at2/119+13854139..13855577expressed protein
LOC_Os09g23350Os.15914.1.S1_at11/119+13874998..13878642glycosyl transferase family 20 protein, putative, expressed
LOC_Os09g23360Os.51840.1.S1_at11/119+13879664..13882886expressed protein
LOC_Os09g23370Os.16406.1.S1_at11/119+13886390..13889111expressed protein
LOC_Os09g23370Os.16406.2.S1_at9/119+13886390..13889111expressed protein
LOC_Os09g23380Os.27823.1.S1_at11/119+13890808..13896338RNA-metabolising metallo-beta-lactamase family protein, expressed
LOC_Os09g23390OsAffx.29985.1.S1_at11/119+13900842..13901812hypothetical protein
LOC_Os09g23400NANA9+13907220..13908604hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51840.1.S1_at--871--2771Chr09:13880170..13880194 (25 bp)
AAGAGTTCCTTTGGTGTTCTGCACA
LOC_Os09g23360
Os.51840.1.S1_at--139--8211Chr09:13880129..13880153 (25 bp)
GGAATGAGCTCCTCTATACAGAAGC
LOC_Os09g23360
Os.51840.1.S1_at--780--9731Chr09:13880087..13880111 (25 bp)
TAATTATGGAACTTCTGGCCACCCA
LOC_Os09g23360
Os.51840.1.S1_at--901--8451Chr09:13880072..13880096 (25 bp)
TGGCCACCCATATGGAAGCAGTCGA
LOC_Os09g23360
Os.51840.1.S1_at--581--6551Chr09:13879983..13880007 (25 bp)
GATTATTTAGCCTTTTCTCAAGTCA
LOC_Os09g23360
Os.51840.1.S1_at--692--5471Chr09:13879951..13879975 (25 bp)
GAACTAGATGCTGCTACAGAGCCTT
LOC_Os09g23360
Os.51840.1.S1_at--885--9851Chr09:13879937..13879961 (25 bp)
TACAGAGCCTTATAGAGTAGTCCCC
LOC_Os09g23360
Os.51840.1.S1_at--140--7051Chr09:13879875..13879899 (25 bp)
GTAAAATGCTACCACAGTCCACAGT
LOC_Os09g23360
Os.51840.1.S1_at--1121--1131Chr09:13879860..13879884 (25 bp)
AGTCCACAGTTTACCATGTGCAACA
LOC_Os09g23360
Os.51840.1.S1_at--951--6651Chr09:13879809..13879833 (25 bp)
GTTGACCAAAGTGCTGTATGCTCTT
LOC_Os09g23360
Os.51840.1.S1_at--692--6951Chr09:13879773..13879797 (25 bp)
GTAGAATTCTTGTTTTATGCCTGTA
LOC_Os09g23360
Target Sequence 
AAGAGTTCCTTTGGTGTTCTGCACAGATAGCACAGATATGTGGAATGAGCTCCTCTATACAGAAGCTGTTTTAGCGTAGC
ATTTAATTATGGAACTTCTGGCCACCCATATGGAAGCAGTCGACAATTTCAAGATGATAGTATGCACCCATAAGACTAGA
GATGATGCTAGTGTAAAGTTCGGTTCAGATTATTTAGCCTTTTCTCAAGTCAAGATATGGAACTAGATGCTGCTACAGAG
CCTTATAGAGTAGTCCCCCAGGTACATCGATTTTTTGTTTTCTTTTTTTTTTTGAGTAAAATGCTACCACAGTCCACAGT
TTACCATGTGCAACATATATTTTTTAGATACACACATGCAAGTTGACCAAAGTGCTGTATGCTCTTATACTTTTAAGGTA
GAATTCTTGTTTTATGCCTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51840.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis