Browse Element(s) Details


Os.51854.1.S1_at

Description gb:AK109450.1
DB_XREF= gi:32994659
TID=Os.51854.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.51854 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-114-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-F08, full insert sequence.
FL= gb:AK064089.1 gb:AK109450.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4806011/11ABC transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48030Os.11547.1.S1_s_at11/116+29050014..29054208Peroxidase 16 precursor, putative, expressed
LOC_Os06g48030OsAffx.28164.2.S1_at11/116+29050014..29054208Peroxidase 16 precursor, putative, expressed
LOC_Os06g48030OsAffx.28164.1.S1_at9/116+29050014..29054208Peroxidase 16 precursor, putative, expressed
LOC_Os06g48030Os.26986.1.A1_at1/116+29050014..29054208Peroxidase 16 precursor, putative, expressed
LOC_Os06g48040Os.14848.1.S1_at11/116+29058707..29062782Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g48050Os.9637.1.S1_at11/116+29067774..29070756expressed protein
LOC_Os06g48060Os.51854.1.S1_at11/116+29071377..29075033ABC transporter family protein, expressed
LOC_Os06g48070OsAffx.18275.1.S1_x_at1/116+29085085..29088671retrotransposon protein, putative, unclassified
LOC_Os06g48080NANA6+29092084..29093768retrotransposon protein, putative, unclassified
LOC_Os06g48090OsAffx.22492.1.S1_x_at1/116+29094905..29101043retrotransposon protein, putative, unclassified
LOC_Os06g48090OsAffx.22492.1.S1_at1/116+29094905..29101043retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005215molecular_functiontransporter activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51854.1.S1_at--1027--1031Chr06:29071881..29071905 (25 bp)
AGGTGCTTCTGCTGGATGAGCCGAC
LOC_Os06g48060
Os.51854.1.S1_at--269--671Chr06:29071866..29071890 (25 bp)
ATGAGCCGACGAGCGCGTTGGATCC
LOC_Os06g48060
Os.51854.1.S1_at--399--10871Chr06:29071849..29071873 (25 bp)
TTGGATCCCATCTCGACGCAGAACA
LOC_Os06g48060
Os.51854.1.S1_at--990--7451Chr06:29071771..29071795 (25 bp)
GTGTCGCACAGCGTGAAGCAGATCC
LOC_Os06g48060
Os.51854.1.S1_at--916--8991Chr06:29071630..29071654 (25 bp)
TGAAGACTGGCACGACGATCTCCTC
LOC_Os06g48060
Os.51854.1.S1_at--407--691Chr06:29071596..29071620 (25 bp)
ATGACGCTTCTTCCGTTTGTGTGAT
LOC_Os06g48060
Os.51854.1.S1_at--973--8671Chr06:29071577..29071601 (25 bp)
TGTGATTCGGATGTGTACCTGTAAT
LOC_Os06g48060
Os.51854.1.S1_at--628--6551Chr06:29071539..29071563 (25 bp)
GATTATGCCTGTATACTATGTCGGA
LOC_Os06g48060
Os.51854.1.S1_at--368--7391Chr06:29071505..29071529 (25 bp)
GTGAGATGATCTCAACCCTACTGGC
LOC_Os06g48060
Os.51854.1.S1_at--47--10411Chr06:29071452..29071476 (25 bp)
TTATCTAAACCCTAGTGGCCTCCGA
LOC_Os06g48060
Os.51854.1.S1_at--537--4031Chr06:29071430..29071454 (25 bp)
CGAGGCTCCGACATTGTATTTTTGC
LOC_Os06g48060
Target Sequence 
AGGTGCTTCTGCTGGATGAGCCGACGAGCGCGTTGGATCCCATCTCGACGCAGAACATCGAGGAGGCGATCGTGCGGCTG
AAGAAGACGAGGGGGCTCACCACGGTGATGGTGTCGCACAGCGTGAAGCAGATCCAGCGGATCGCCGACCTGGTCTGCCT
CCTCGTCGCCGGCGAGGTCGTCGAGGTGCTCCCGCCGTCGGAGCTGTCCGAGNCCAAGCACCCCATGGCACGGCGCTTCC
TCGAGCTCAGCTGAAGACTGGCACGACGATCTCCTCCTCCTCTGTATGACGCTTCTTCCGTTTGTGTGATTCGGATGTGT
ACCTGTAATCTTGAGAAGTTGAGATTATGCCTGTATACTATGTCGGAAATTTTGTGGTGAGATGATCTCAACCCTACTGG
CCATAAAATGCATTTTGGTAAATATTCTTTTATCTAAACCCTAGTGGCCTCCGAGGCTCCGACATTGTATTTTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51854.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis