Browse Element(s) Details


Os.51862.1.S1_at

Description gb:AK064107.1
DB_XREF= gi:32974125
TID=Os.51862.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51862 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-E10, full insert sequence.
FL= gb:AK064107.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3614010/11RNA recognition motif 2 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36090Os.13470.1.S1_at11/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090OsAffx.30147.1.S1_at11/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090Os.52012.1.S1_x_at10/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090Os.46045.2.S1_x_at1/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36100Os.11928.1.S1_at11/119+20787061..20789982expressed protein
LOC_Os09g36100Os.47993.1.S1_x_at11/119+20787061..20789982expressed protein
LOC_Os09g36100OsAffx.30148.1.S1_s_at11/119+20787061..20789982expressed protein
LOC_Os09g36110OsAffx.18006.1.S1_at11/119+20793975..20797285Subtilisin N-terminal Region family protein, expressed
LOC_Os09g36120Os.54437.1.S1_at11/119+20797439..20798055expressed protein
LOC_Os09g36130Os.57099.1.S1_at10/119+20798680..20802439expressed protein
LOC_Os09g36140Os.51862.1.S1_at10/119+20810885..20812689RNA recognition motif 2 family protein, expressed
LOC_Os09g36150NANA9+20826782..20828631retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51862.1.S1_at--834--1231Chr09:20811420..20811444 (25 bp)
AGTTCCTGCCGGTGTGGTTCGAGCC
LOC_Os09g36140
Os.51862.1.S1_at--840--3991Chr09:20811293..20811317 (25 bp)
CGTGGGTTGCGCATGGTATCTATCT
LOC_Os09g36140
Os.51862.1.S1_at--1108--6891Chr09:20811278..20811302 (25 bp)
GTATCTATCTTGCATTCTATCCCTA
LOC_Os09g36140
Os.51862.1.S1_at--1007--111Chr09:20811265..20811289 (25 bp)
ATTCTATCCCTACCGATTGTCCAAA
LOC_Os09g36140
Os.51862.1.S1_at--1074--9391Chr09:20811168..20811192 (25 bp)
TCGTAGTCTTTCCTTGTTCGTTTCT
LOC_Os09g36140
Os.51862.1.S1_at--397--1231Chr09:20811116..20811140 (25 bp)
AGTTCTGCCGTTGTTGTGTTGTAAT
LOC_Os09g36140
Os.51862.1.S1_at--10--4751Chr09:20811078..20811102 (25 bp)
GCTGTTATGTTTGAGCCGATCGATA
LOC_Os09g36140
Os.51862.1.S1_at--786--3031Chr09:20811054..20811078 (25 bp)
AATCCTTCGTTGTTGTGTGTTGTTA
LOC_Os09g36140
Os.51862.1.S1_at--1049--10031Chr09:20811017..20811041 (25 bp)
TAGTACTAAGTACCGCGTCCTCCGA
LOC_Os09g36140
Os.51862.1.S1_at--779--7251NONE
GTCCTCCGACCAATAATCCGAGTAT
NONE
Os.51862.1.S1_at--1139--3011Chr09:20810966..20810990 (25 bp)
AATGCCCGGTTGATGTCCTACTAAC
LOC_Os09g36140
Target Sequence 
AGTTCCTGCCGGTGTGGTTCGAGCCGCCGCGCGACGGCGAGCAGCAGACGAAGGCGCACGTGGTCGGCCGCCTCGTCGTG
CGCCCACGCTAGCTGGTCGTCGTCGTCGGCGTCGTCTCCGGCGACGGCGTGGGTTGCGCATGGTATCTATCTTGCATTCT
ATCCCTACCGATTGTCCAAATCGATCAATGGATGCATGGAAGGATAGAACGGGAGATAGATTCATATAGAGAGGCTGGCT
TGGCTTGGTTGTTCGTAGTCTTTCCTTGTTCGTTTCTACTGTAGTAGTAGCAGATAGAACTACTAGTTCTGCCGTTGTTG
TGTTGTAATCATATGTGTAGTGGCTGTTATGTTTGAGCCGATCGATAATCCTTCGTTGTTGTGTGTTGTTAACTTAACTC
TACTAGTACTAAGTACCGCGTCCTCCGACCAATAATCCGAGTATTTGCTATGGCAATGCCCGGTTGATGTCCTACTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51862.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis