Browse Element(s) Details


Os.51863.1.S1_at

Description gb:AK064112.1
DB_XREF= gi:32974130
TID=Os.51863.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51863 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-H05, full insert sequence.
FL= gb:AK064112.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g470108/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46960Os.11255.1.S1_at10/114+27619603..27621683phospholipid hydroperoxide glutathione peroxidase, putative, expressed
LOC_Os04g46970Os.53972.1.S1_at10/114+27624161..27629237Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g46970Os.28139.1.S1_at1/114+27624161..27629237Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g46980Os.46328.1.S1_x_at9/114+27629470..27631200Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g46980Os.46328.1.S1_at9/114+27629470..27631200Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g46990Os.46328.1.S1_x_at1/114+27634208..27635806Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g47000OsAffx.26495.1.S1_at11/114+27639968..27641782hypothetical protein
LOC_Os04g47000OsAffx.14084.1.S1_x_at1/114+27639968..27641782hypothetical protein
LOC_Os04g47010Os.51863.1.S1_at8/114+27644991..27647491expressed protein
LOC_Os04g47020Os.11569.1.S1_at11/114+27648990..27651276genetic modifier, putative, expressed
LOC_Os04g47030NANA4+27652055..27654368hypothetical protein
LOC_Os04g47040Os.49810.1.S1_at11/114+27662061..27671679Anthocyanin regulatory Lc protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51863.1.S1_at--337--6131Chr04:27645393..27645417 (25 bp)
GAGTGGTTGGCACGTCAATCTGCAA
LOC_Os04g47010
Os.51863.1.S1_at--693--2431NONE
AAAATGAAATGCCACGATCCTACCC
NONE
Os.51863.1.S1_at--815--3091Chr04:27645312..27645336 (25 bp)
AATACCGTACTTTCAGATATTCCTG
LOC_Os04g47010
Os.51863.1.S1_at--949--6511Chr04:27645297..27645321 (25 bp)
GATATTCCTGGGACAATAGCACAAT
LOC_Os04g47010
Os.51863.1.S1_at--708--3131Chr04:27645275..27645299 (25 bp)
AATTATTTGCTGGTAGCCGATCCGA
LOC_Os04g47010
Os.51863.1.S1_at--1116--4491NONE
GCCGATCCGATATTATTAAGCAGCG
NONE
Os.51863.1.S1_at--921--9771NONE
TAAGCAGCGGATGACACCTCAGAAT
NONE
Os.51863.1.S1_at--1090--10251Chr04:27645172..27645196 (25 bp)
TTTGAATGCTTTTGATCGCTCCCTA
LOC_Os04g47010
Os.51863.1.S1_at--784--7951Chr04:27645145..27645169 (25 bp)
GGATCAATCACCACTAGATATCATG
LOC_Os04g47010
Os.51863.1.S1_at--163--4131Chr04:27645039..27645063 (25 bp)
CGCATGGCAACGCTGATATAGTGAT
LOC_Os04g47010
Os.51863.1.S1_at--295--6511Chr04:27645025..27645049 (25 bp)
GATATAGTGATGTATGCTCTTGCTT
LOC_Os04g47010
Target Sequence 
GAGTGGTTGGCACGTCAATCTGCAAAATGAAATGCCACGATCCTACCCCCCAGCAATCTAACAAGTAAAGGCAGTCAAAC
TAATACCGTACTTTCAGATATTCCTGGGACAATAGCACAATTATTTGCTGGTAGCCGATCCGATATTATTAAGCAGCGGA
TGACACCTCAGAATGATATATATGACATGGTAAGGCATGGTAGTATCAATAGAAAGCAACTTTTGAATGCTTTTGATCGC
TCCCTACAGGATCAATCACCACTAGATATCATGTTTTTCTTGTAGTAAACTGTATGAGCCAAGCGCTCTTGCTATGTTTT
TCTGTTCAGAAATGGAAAAATCAAGTAATGTAAGCGCATGGCAACGCTGATATAGTGATGTATGCTCTTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51863.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis