Browse Element(s) Details


Os.51890.1.S1_at

Description gb:AK064198.1
DB_XREF= gi:32974216
TID=Os.51890.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51890 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-104-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-D07, full insert sequence.
FL= gb:AK064198.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1542011/11dynamin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15370OsAffx.30103.1.S1_s_at11/113+8388987..8391428Ubiquitin, putative, expressed
LOC_Os03g15370OsAffx.30103.5.S1_s_at11/113+8388987..8391428Ubiquitin, putative, expressed
LOC_Os03g15380Os.55672.1.S1_at11/113+8392251..8394017expressed protein
LOC_Os03g15380OsAffx.25098.1.S1_s_at11/113+8392251..8394017expressed protein
LOC_Os03g15390OsAffx.12874.1.S1_at11/113+8394761..8397985expressed protein
LOC_Os03g15400NANA3+8402316..8403137transposon protein, putative, unclassified
LOC_Os03g15410Os.23308.1.A1_at11/113+8408380..8412584expressed protein
LOC_Os03g15420Os.51890.1.S1_at11/113+8413842..8416248dynamin family protein, putative, expressed
LOC_Os03g15430Os.21461.1.S1_at10/113+8416414..8420959Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g15440Os.54743.1.S1_at11/113+8437184..8440119Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51890.1.S1_at--835--1791Chr03:8415674..8415698 (25 bp)
ACCGCGTACTGGAGGAGCATCGTGC
LOC_Os03g15420
Os.51890.1.S1_at--235--9351Chr03:8415777..8415801 (25 bp)
TCGCGGATGAGCTCCTGGGCAACAA
LOC_Os03g15420
Os.51890.1.S1_at--902--1451Chr03:8415867..8415891 (25 bp)
AGAAGAGCATCGTCCTGCTGCGGCA
LOC_Os03g15420
Os.51890.1.S1_at--168--6451Chr03:8415925..8415949 (25 bp)
GATCAGCGCCGCAGGTGAAGTTTAG
LOC_Os03g15420
Os.51890.1.S1_at--36--10091Chr03:8415947..8415971 (25 bp)
TAGGCTGTTGCCTTAGGTCAAAACT
LOC_Os03g15420
Os.51890.1.S1_at--597--3511Chr03:8415990..8416014 (25 bp)
CATGTGCTGTTGTGGCGTGTCGCTA
LOC_Os03g15420
Os.51890.1.S1_at--1152--4651Chr03:8416004..8416028 (25 bp)
GCGTGTCGCTAGCTGTGAACCTAAG
LOC_Os03g15420
Os.51890.1.S1_at--422--5431Chr03:8416020..8416044 (25 bp)
GAACCTAAGTTGATTGCCGTCTGCT
LOC_Os03g15420
Os.51890.1.S1_at--1058--71Chr03:8416032..8416056 (25 bp)
ATTGCCGTCTGCTGTTATGGTTAAC
LOC_Os03g15420
Os.51890.1.S1_at--1092--6671Chr03:8416071..8416095 (25 bp)
GTTGCGGTGGGCATATGCATCACTA
LOC_Os03g15420
Os.51890.1.S1_at--977--4951Chr03:8416087..8416111 (25 bp)
GCATCACTAATTGTCCTGTTTTGTT
LOC_Os03g15420
Target Sequence 
ACCGCGTACTGGAGGAGCATCGTGCTCCGCCTCGTCGACGGGCTGGCGCTGCACGTGCTTCGGGTCGTCAAGCGCCTCGT
GGAGCACGACCTTGAGGCGGAGCTCGCGGATGAGCTCCTGGGCAACAAGATGGCCGGCGTGGAGAGGATGCTGGCGCCGT
CGCCGAGCACCGGCGCCAAGCGCGAGCGCCTGAAGAAGAGCATCGTCCTGCTGCGGCAGTCCAAGGAGGTTGTCGCGAAC
ATCATGGACAGGATCAGCGCCGCAGGTGAAGTTTAGGCTGTTGCCTTAGGTCAAAACTTTGGATTTATGGTGTTGCCATG
TGCTGTTGTGGCGTGTCGCTAGCTGTGAACCTAAGTTGATTGCCGTCTGCTGTTATGGTTAACTTTTGATTCGTAATGTT
GCGGTGGGCATATGCATCACTAATTGTCCTGTTTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51890.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis