Browse Element(s) Details


Os.51929.1.S1_at

Description gb:AK064310.1
DB_XREF= gi:32974328
TID=Os.51929.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51929 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-107-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-B12, full insert sequence.
FL= gb:AK064310.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g313309/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31280OsAffx.18472.1.S1_at11/1110+16077908..16078688hypothetical protein
LOC_Os10g31290Os.46672.1.S1_at11/1110+16079569..16086346expressed protein
LOC_Os10g31300OsAffx.27523.2.S1_at11/1110+16088727..16090054hypothetical protein
LOC_Os10g31310OsAffx.27523.3.S1_x_at11/1110+16093294..16094269transposon protein, putative, unclassified
LOC_Os10g31310OsAffx.27523.3.S1_at11/1110+16093294..16094269transposon protein, putative, unclassified
LOC_Os10g31310OsAffx.27523.4.S1_at3/1110+16093294..16094269transposon protein, putative, unclassified
LOC_Os10g31320Os.51176.1.S1_at11/1110+16096614..16097539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31320Os.11040.1.S1_x_at10/1110+16096614..16097539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31330Os.51848.1.S1_x_at11/1110+16099462..16100539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31330Os.51929.1.S1_at9/1110+16099462..16100539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31340NANA10+16108759..16109793hypothetical protein
LOC_Os10g31350OsAffx.8061.1.S1_at10/1110+16115851..16118858transposon protein, putative, Mutator sub-class
LOC_Os10g31360Os.48030.1.A1_at11/1110+16120211..16120921GRF zinc finger family protein, expressed
LOC_Os10g31370OsAffx.18474.1.S1_at11/1110+16124617..16125688hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51929.1.S1_at--511--5291Chr10:16099613..16099637 (25 bp)
GAATGGACTTGTTAACTCTCGGTGA
LOC_Os10g31330
Os.51929.1.S1_at--1103--2031Chr10:16099607..16099631 (25 bp)
ACTTGTTAACTCTCGGTGATCTTGA
LOC_Os10g31330
Os.51929.1.S1_at--537--2531Chr10:16099600..16099624 (25 bp)
AACTCTCGGTGATCTTGAGTTGTAA
LOC_Os10g31330
Os.51929.1.S1_at--914--6051Chr10:16099584..16099608 (25 bp)
GAGTTGTAAACTGGACTTGTTCTCA
LOC_Os10g31330
Os.51929.1.S1_at--424--8131Chr10:16099572..16099596 (25 bp)
GGACTTGTTCTCAGTAGGGCTGCTA
LOC_Os10g31330
Os.51929.1.S1_at--812--1071Chr10:16099557..16099581 (25 bp)
AGGGCTGCTAGCTAGCATTTCTAGA
LOC_Os10g31330
Os.51929.1.S1_at--470--191Chr10:16099541..16099565 (25 bp)
ATTTCTAGATTCCAACATGTTCGCT
LOC_Os10g31330
Os.51929.1.S1_at--940--6571Chr10:16099534..16099558 (25 bp)
GATTCCAACATGTTCGCTTACACGG
LOC_Os10g31330
Os.51929.1.S1_at--926--2091Chr10:16099527..16099551 (25 bp)
ACATGTTCGCTTACACGGTGTTAAA
LOC_Os10g31330
Os.51929.1.S1_at--87--4771NONE
GCTGCAGATTGTAATGAGACTACCC
NONE
Os.51929.1.S1_at--1134--5971NONE
GAGACTACCCAGATAAAGTTTCAAT
NONE
Target Sequence 
GAATGGACTTGTTAACTCTCGGTGATCTTGAGTTGTAAACTGGACTTGTTCTCAGTAGGGCTGCTAGCTAGCATTTCTAG
ATTCCAACATGTTCGCTTACACGGTGTTAAAAAAATATTGCTGCAGATTGTAATGAGACTACCCAGATAAAGTTTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51929.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis