Browse Element(s) Details


Os.51957.1.S1_at

Description gb:AK064409.1
DB_XREF= gi:32974427
TID=Os.51957.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51957 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-110-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-A03, full insert sequence.
FL= gb:AK064409.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g302807/11csAtPR5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g30240Os.52801.1.S1_at9/117+17868931..17878469MutS family domain IV containing protein
LOC_Os07g30250Os.52388.1.S1_x_at5/117+17880013..17885956hypothetical protein
LOC_Os07g30260OsAffx.28672.1.S1_at11/117+17888462..17889043hypothetical protein
LOC_Os07g30270Os.2741.4.S1_x_at8/117+17890565..17896722retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os07g30280Os.51957.1.S1_at7/117+17900946..17902966csAtPR5, putative, expressed
LOC_Os07g30300Os.9104.1.S1_at11/117+17905647..17910604small G protein family protein, putative, expressed
LOC_Os07g30310Os.7307.3.S1_x_at2/117+17912783..17923150retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g30310Os.45173.1.S1_x_at1/117+17912783..17923150retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51957.1.S1_at--1082--10391Chr07:17902485..17902509 (25 bp)
TTTTGAGCTCTCATGCCTTTACATT
LOC_Os07g30280
Os.51957.1.S1_at--31--10491Chr07:17902539..17902563 (25 bp)
TTAAGAGGCGCGTGGCTTCCAACAA
LOC_Os07g30280
Os.51957.1.S1_at--893--6431Chr07:17902579..17902603 (25 bp)
GATCACGTTTGCTTTAATTCCAGAG
LOC_Os07g30280
Os.51957.1.S1_at--812--8851Chr07:17902636..17902660 (25 bp)
TGATGGGTCATTGGATCCTTCCCTA
LOC_Os07g30280
Os.51957.1.S1_at--5--2991Chr07:17902704..17902728 (25 bp)
AATGTGTGTTGCTTGATCCTCGAGA
LOC_Os07g30280
Os.51957.1.S1_at--461--7711NONE
GGGTGCAACGGTGATCAGCGACAAT
NONE
Os.51957.1.S1_at--897--10071Chr07:17902756..17902780 (25 bp)
TAGTGTCAAACTTACTCGATCTGTT
LOC_Os07g30280
Os.51957.1.S1_at--181--8611Chr07:17902926..17902950 (25 bp)
TGGTGGTTAAAGTTTCCTGGTCTCG
LOC_Os07g30280
Os.51957.1.S1_at--673--4071Chr07:17902949..17902973 (25 bp)
CGACTTTCCATTTGTTGACTGAACA
NONE
Os.51957.1.S1_at--457--5491Chr07:17902969..17902993 (25 bp)
GAACATTATTTTGTAGCCGGTGCTA
NONE
Os.51957.1.S1_at--134--5491Chr07:17903007..17903031 (25 bp)
GAACTTGTGCTATCCTTTTTTATGA
NONE
Target Sequence 
TTTTGAGCTCTCATGCCTTTACATTCAACTGCATCTATGACGATGGTAGTAGTGTTAAGAGGCGCGTGGCTTCCAACAAG
CGCAGCACGGTGCAGATCACGTTTGCTTTAATTCCAGAGACAGTGGAGGCGACATTTGAGGTTAAAGTCGTTGATGGGTC
ATTGGATCCTTCCCTACGCCCACATTTCTTTGCTTCTACTCACCACCATCCCAGCACGGAATGTGTGTTGCTTGATCCTC
GAGAGGGTGCAACGGTGATCAGCGACAATAATAGTGTCAAACTTACTCGATCTGTTGTTTCCGTTGAAGTGCTGGGGGGA
TTGAAGCTTACTGCAGAGGCTCTAGATGATGAAAAAGCTGTTGTTCCTAGGACAACAATTATCTTCGAACCACAAAGGGA
TGGTAGAGTGTATGGATTTCTTGATCTTAATTGTTGTAAGATGGTGGTTAAAGTTTCCTGGTCTCGACTTTCCATTTGTT
GACTGAACATTATTTTGTAGCCGGTGCTATGTTGATATGTAGGAACTTGTGCTATCCTTTTTTATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51957.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis