Browse Element(s) Details


OsAffx.28672.1.S1_at

Description tigr:9635.m02956
TID=OsAffx.28672.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3026011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g30240Os.52801.1.S1_at9/117+17868931..17878469MutS family domain IV containing protein
LOC_Os07g30250Os.52388.1.S1_x_at5/117+17880013..17885956hypothetical protein
LOC_Os07g30260OsAffx.28672.1.S1_at11/117+17888462..17889043hypothetical protein
LOC_Os07g30270Os.2741.4.S1_x_at8/117+17890565..17896722retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os07g30280Os.51957.1.S1_at7/117+17900946..17902966csAtPR5, putative, expressed
LOC_Os07g30300Os.9104.1.S1_at11/117+17905647..17910604small G protein family protein, putative, expressed
LOC_Os07g30310Os.7307.3.S1_x_at2/117+17912783..17923150retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g30310Os.45173.1.S1_x_at1/117+17912783..17923150retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28672.1.S1_at--468--3031Chr07:17888943..17888967 (25 bp)
AATCGACCTTCATGGCGCCGTTCAA
LOC_Os07g30260
OsAffx.28672.1.S1_at--1000--6751Chr07:17888924..17888948 (25 bp)
GTTCAAGTTCTGCAGCGATGGCCGA
LOC_Os07g30260
OsAffx.28672.1.S1_at--903--871Chr07:17888907..17888931 (25 bp)
ATGGCCGACCGTTGATGCGGGACAA
LOC_Os07g30260
OsAffx.28672.1.S1_at--242--2211Chr07:17888886..17888910 (25 bp)
ACAACGGATCTATCGGAGTGCTCGC
LOC_Os07g30260
OsAffx.28672.1.S1_at--772--6491Chr07:17888860..17888884 (25 bp)
GATAGTGACCCACGTGAGCTTCGGT
LOC_Os07g30260
OsAffx.28672.1.S1_at--510--1151Chr07:17888797..17888821 (25 bp)
AGTCGCTCCGTCTCTATATATATAT
LOC_Os07g30260
OsAffx.28672.1.S1_at--404--10191Chr07:17888779..17888803 (25 bp)
TATATATCTATCCACGTCGGCATCG
LOC_Os07g30260
OsAffx.28672.1.S1_at--834--10391Chr07:17888724..17888748 (25 bp)
TTTTCCTCACCGTCAGTGGCAGATG
LOC_Os07g30260
OsAffx.28672.1.S1_at--245--10851Chr07:17888681..17888705 (25 bp)
TTGGGACTCCTGCTGTGTGACACGA
LOC_Os07g30260
OsAffx.28672.1.S1_at--982--1071Chr07:17888657..17888681 (25 bp)
AGGGCAACGAGCACGCGGTGTTCCA
LOC_Os07g30260
OsAffx.28672.1.S1_at--778--7631Chr07:17888497..17888521 (25 bp)
GGGACCACACCGTTTTTTCATATGT
LOC_Os07g30260
Target Sequence 
AATCGACCTTCATGGCGCCGTTCAAGTTCTGCAGCGATGGCCGACCGTTGATGCGGGACAACGGATCTATCGGAGTGCTC
GCCGATAGTGACCCACGTGAGCTTCGGTCAGCTCTCCGCCGCCTTCTCCTCTGGCCTGACGCCCCCAGTCGCTCCGTCTC
TATATATATATCTATCCACGTCGGCATCGGGACCCTCGGCTCCCCCGCACGCGCGCCCTTTTTCCTCACCGTCAGTGGCA
GATGCCGCTGTGGAGAAGAGCGTTGGGACTCCTGCTGTGTGACACGAGGGCAACGAGCACGCGGTGTTCCACTTCGGCCG
ACGAGGACCCACTTCGCGCGCCGAGGAGAGTGCCGCCGCGGTCGTCGAACTCCACTTCGGCCACCCCCAACGCCGGCGTC
TGATAGCTGGAGGAGAGAGATGAGTGAAGGGGAGAGAATTACAAGTGGGACCACACCGTTTTTTCATATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28672.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis