Browse Element(s) Details


Os.9104.1.S1_at

Description gb:AK063998.1
DB_XREF= gi:32974016
TID=Os.9104.1
CNT=32
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.9104 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013130L24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-F03, full insert sequence.
FL= gb:AK063998.1 gb:AK068175.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3030011/11small G protein family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g30250Os.52388.1.S1_x_at5/117+17880013..17885956hypothetical protein
LOC_Os07g30260OsAffx.28672.1.S1_at11/117+17888462..17889043hypothetical protein
LOC_Os07g30270Os.2741.4.S1_x_at8/117+17890565..17896722retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os07g30280Os.51957.1.S1_at7/117+17900946..17902966csAtPR5, putative, expressed
LOC_Os07g30300Os.9104.1.S1_at11/117+17905647..17910604small G protein family protein, putative, expressed
LOC_Os07g30310Os.7307.3.S1_x_at2/117+17912783..17923150retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g30310Os.45173.1.S1_x_at1/117+17912783..17923150retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g30320OsAffx.22848.4.S1_at1/117+17933189..17939146retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g30320OsAffx.22848.3.S1_x_at1/117+17933189..17939146retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005100molecular_functionRho GTPase activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9104.1.S1_at--188--1331Chr07:17908966..17908990 (25 bp)
AGAGTTTGTTACAGCACTGCTACTT
LOC_Os07g30300
Os.9104.1.S1_at--1141--5091Chr07:17908979..17909003 (25 bp)
GCACTGCTACTTAGAGTAAGCCGTA
LOC_Os07g30300
Os.9104.1.S1_at--454--1591Chr07:17908997..17909020 (24 bp)
AGCCGTAAATCATCGCTTAACAAGA
LOC_Os07g30300
Os.9104.1.S1_at--1020--9811Chr07:17909626..17909698 (25 bp)
TAACAAGATGGACTCTCGTAGCCTT
LOC_Os07g30300
Os.9104.1.S1_at--660--3771Chr07:17909686..17909710 (25 bp)
CTCTCGTAGCCTTGCAGTGGAATTT
LOC_Os07g30300
Os.9104.1.S1_at--54--3691Chr07:17909715..17909739 (25 bp)
CTTTGATCATGTGGCAGCAAGGTGA
LOC_Os07g30300
Os.9104.1.S1_at--377--10051Chr07:17909767..17909791 (25 bp)
TAGATTTACCCTAAAAGCACCTCCA
LOC_Os07g30300
Os.9104.1.S1_at--222--4211Chr07:17910097..17910121 (25 bp)
CCCCAGATTACAGCTCAATTGAGGT
LOC_Os07g30300
Os.9104.1.S1_at--126--1971Chr07:17910159..17910183 (25 bp)
ACTGATGCGAACGAGACCGTATGGA
LOC_Os07g30300
Os.9104.1.S1_at--357--3471Chr07:17910275..17910299 (25 bp)
CAGGGAGACGCATTTTGGTCGAAAT
LOC_Os07g30300
Os.9104.1.S1_at--716--2031Chr07:17910326..17910350 (25 bp)
ACTAGTATTAATTCTCCATAGGAGG
LOC_Os07g30300
Target Sequence 
AGAGTTTGTTACAGCACTGCTACTTAGAGTAAGCCGTAAATCATCGCTTAACAAGATGGACTCTCGTAGCCTTGCAGTGG
AATTTGCNCCTTTGATCATGTGGCAGCAAGGTGANTCTGGAACAGATTTGCGGAATCATCTTAGATTTACCCTAAAAGCA
CCTCCAAAAATTGTGGATACAACATCAAATACCACAGAATGGGATCTGNTAGATGAGGATGATGTGGATGCNTCTTCCCA
AATCCCNTTGGATGACGCNTCGCCCCCAGATTACAGCTCAATTGAGGTCATCCAATCTCTNATTGAGCATCACAATGCCA
TTTTCACTGATGCGAACGAGACCGTATGGAGATAGCCAGCGTCTCTAGATTTCACTGGTGTTATTAGCTCGTGCAATGTA
CAAGTTCCAGGTAGGAGGATGGAGTATTTGCACATTGTCGTCAGGGAGACGCATTTTGGTCGAAATATTTCTTAAAATAG
ATTTGTATATATACTAGTATTAATTCTCCATAGGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9104.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis