Browse Element(s) Details


Os.52388.1.S1_x_at

Description gb:AK066795.1
DB_XREF= gi:32976813
TID=Os.52388.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52388 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013085C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013085C10, full insert sequence.
FL= gb:AK066795.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g302505/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g30230OsAffx.22940.2.S1_s_at11/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30230Os.35344.3.S1_x_at11/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30230OsAffx.22940.5.S1_at9/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30230OsAffx.22940.5.S1_x_at9/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30230Os.35344.18.S1_x_at9/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30230OsAffx.22940.3.S1_x_at9/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30230OsAffx.22940.1.S1_s_at9/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30230OsAffx.22940.2.S1_at8/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30230OsAffx.31552.2.S1_at1/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30240Os.52801.1.S1_at9/117+17868931..17878469MutS family domain IV containing protein
LOC_Os07g30250Os.52388.1.S1_x_at5/117+17880013..17885956hypothetical protein
LOC_Os07g30260OsAffx.28672.1.S1_at11/117+17888462..17889043hypothetical protein
LOC_Os07g30270Os.2741.4.S1_x_at8/117+17890565..17896722retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os07g30280Os.51957.1.S1_at7/117+17900946..17902966csAtPR5, putative, expressed
LOC_Os07g30300Os.9104.1.S1_at11/117+17905647..17910604small G protein family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52388.1.S1_x_at--245--10211Chr07:17880174..17880278 (25 bp)
TATTTCAAGGGCTCATTCTCTTTCC
LOC_Os07g30250
Os.52388.1.S1_x_at--677--7471Chr07:17880125..17880149 (25 bp)
GTGTGTTGCTCATTTCTGGCCTGAC
LOC_Os07g30250
Os.52388.1.S1_x_at--643--4471Chr07:17880107..17880131 (25 bp)
GCCTGACCACAGCTTTCTCTGAAAG
LOC_Os07g30250
Os.52388.1.S1_x_at--849--5531Chr07:17880068..17880092 (25 bp)
GAAACAGGTTCAAGCAGACCCTTCC
LOC_Os07g30250
Os.52388.1.S1_x_at--244--3571Chr07:17880025..17880049 (25 bp)
CATAATGTGCCTGGGTTTCTCATCA
LOC_Os07g30250
Os.52388.1.S1_x_at--206--5371Chr07:17879855..17879879 (25 bp)
GAAGAGCCGCGACAAACTTGCATGA
NONE
Os.52388.1.S1_x_at--509--10451Chr07:17879798..17879822 (25 bp)
TTAGCATTCGCCTGATAACCGCATT
NONE
Os.52388.1.S1_x_at--398--9891Chr07:17879734..17879758 (25 bp)
TACATTGCATGGGTTGACGACAGAA
NONE
Os.52388.1.S1_x_at--830--4691Chr07:17879695..17879719 (25 bp)
GCGGCTGGAGGACTTCACTGAACAT
NONE
Os.52388.1.S1_x_at--541--8571Chr07:17879671..17879695 (25 bp)
TGGATCAAACTGGTCGCGTTCTCTA
NONE
Os.52388.1.S1_x_at--1111--4631Chr07:17879656..17879680 (25 bp)
GCGTTCTCTACTGGAGTCGGGTTAA
NONE
Target Sequence 
TATTTCAAGGGCTCATTCTCTTTCCGCCACTGCTTGCCGGCAGGCTGGGGTGTGTTGCTCATTTCTGGCCTGACCACAGC
TTTCTCTGAAAGGATGTTTCTGAATAGAAACAGGTTCAAGCAGACCCTTCCCATTCACATGGCGATAGGCATAATGTGCC
TGGGTTTCTCATCACTCGAGATATACCGTGGTGAAAAGCAGTTCTTGACGAGTATAATCAGATCATTGAAGAGCCGCGAC
AAACTTGCATGAGTCTAACAACATTCAGGGTTTTGCGAGTGTTTTTAGCATTCGCCTGATAACCGCATTTTCAGAAAGAA
AACATATACGATGCCGTAAATATAATTGTACATTGCATGGGTTGACGACAGAAGATAATTATGCCAAGCGGCTGGAGGAC
TTCACTGAACATGGATCAAACTGGTCGCGTTCTCTACTGGAGTCGGGTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52388.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis