Browse Element(s) Details


Os.51979.1.S1_at

Description gb:AK064455.1
DB_XREF= gi:32974473
TID=Os.51979.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51979 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-110-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-F10, full insert sequence.
FL= gb:AK064455.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3714011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37090Os.37371.1.S1_at10/113+20513407..20516312Uncharacterised protein family containing protein, expressed
LOC_Os03g37100Os.32970.1.S1_at11/113+20517953..20519695DTW domain containing protein, expressed
LOC_Os03g37110OsAffx.13205.1.S1_at10/113+20520864..20523154hypothetical protein
LOC_Os03g37120Os.33737.1.S1_at11/113+20523944..20527235transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g37130Os.2713.1.S1_at11/113+20528890..20533981Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g37140Os.51979.1.S1_at11/113+20539056..20544407expressed protein
LOC_Os03g37170OsAffx.30564.1.S1_s_at11/113+20548981..20549804hypothetical protein
LOC_Os03g37170OsAffx.30564.2.S1_s_at8/113+20548981..20549804hypothetical protein
LOC_Os03g37170OsAffx.30564.2.S1_x_at5/113+20548981..20549804hypothetical protein
LOC_Os03g37170OsAffx.30564.3.S1_at4/113+20548981..20549804hypothetical protein
LOC_Os03g37170OsAffx.30564.1.S1_at4/113+20548981..20549804hypothetical protein
LOC_Os03g37180NANA3+20552788..20555524hypothetical protein
LOC_Os03g37194OsAffx.22699.1.S1_x_at10/113+20556181..20563226retrotransposon protein, putative, unclassified
LOC_Os03g37194OsAffx.13786.1.S1_x_at2/113+20556181..20563226retrotransposon protein, putative, unclassified
LOC_Os03g37194OsAffx.18275.1.S1_x_at1/113+20556181..20563226retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51979.1.S1_at--1033--6271Chr03:20539778..20539802 (25 bp)
GATGTATTCAAGTGTAACCTCTGTG
LOC_Os03g37140
Os.51979.1.S1_at--779--791Chr03:20539717..20539741 (25 bp)
ATGGGCTGTTATCCCGGGAAGTCCA
LOC_Os03g37140
Os.51979.1.S1_at--814--4831Chr03:20539645..20539669 (25 bp)
GCTCAAAGGTCCCTCTGACAGAGAT
LOC_Os03g37140
Os.51979.1.S1_at--1097--5531Chr03:20539473..20539602 (25 bp)
GAAACTCGTTCAGGGTTACTTAGAT
LOC_Os03g37140
Os.51979.1.S1_at--250--5391Chr03:20539419..20539443 (25 bp)
GAAGCACGACCGATAATTCTGGATC
LOC_Os03g37140
Os.51979.1.S1_at--918--3151Chr03:20539405..20539429 (25 bp)
AATTCTGGATCAGTCCTGCAAATCA
LOC_Os03g37140
Os.51979.1.S1_at--1024--1111Chr03:20539229..20539253 (25 bp)
AGTGACAAATCTTCTATCCCTTCTC
LOC_Os03g37140
Os.51979.1.S1_at--107--8271Chr03:20539198..20539222 (25 bp)
GGCATTTTTGAACACCCTATCTTAT
LOC_Os03g37140
Os.51979.1.S1_at--1045--10151Chr03:20539181..20539205 (25 bp)
TATCTTATTCCTTGCTTCTAGTTCC
LOC_Os03g37140
Os.51979.1.S1_at--679--9831Chr03:20539083..20539107 (25 bp)
TAAATGTGACGCACCAGCTTTTGGT
LOC_Os03g37140
Os.51979.1.S1_at--454--8631Chr03:20539059..20539083 (25 bp)
TGGGTGAATGATGGCGCACTTTCTT
LOC_Os03g37140
Target Sequence 
GATGTATTCAAGTGTAACCTCTGTGAATTCATAAAAAATATCATAAAGCCATTGTGGGAAGATGGGCTGTTATCCCGGGA
AGTCCACAAAATTATAGTGAGGAAGGCTGTGGAAAAAGTGACCACCGTGTTGGGCTCAAAGGTCCCTCTGACAGAGATAG
ATGCCTGTAGATTTTTGTTAGAAGAATCTCAGAATCTAGAGAAACTCGTTCAGGGTTACTTAGATTTATACGTGGGAAGG
GAAGTTCTTAAAAAGAAGCACGACCGATAATTCTGGATCAGTCCTGCAAATCACAGAAGCTAACAAGTACAGTAGGAAGC
AACTTTTTTTTTTCAGTTTAGATCGGTGAAAGGAAAGATCAAGTGACAAATCTTCTATCCCTTCTCATATGGGGCATTTT
TGAACACCCTATCTTATTCCTTGCTTCTAGTTCCCACTTCCATGCACCTGCTAAACATATCAATATCTAATCTATGAAGT
GCATAATGCTATGTTGTACTAATTCTGTAAATGTGACGCACCAGCTTTTGGTGGGTGAATGATGGCGCACTTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51979.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis