Browse Element(s) Details


Os.51980.1.S1_at

Description gb:AK064457.1
DB_XREF= gi:32974475
TID=Os.51980.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51980 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-110-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-F12, full insert sequence.
FL= gb:AK064457.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0322011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03170NANA2+1258361..1258591inhibitor I family protein
LOC_Os02g03180NANA2+1259983..1260234inhibitor I family protein
LOC_Os02g03190NANA2+1262119..1262364inhibitor I family protein
LOC_Os02g03200Os.18338.1.S1_at11/112+1263503..1266099FAD-binding domain-containing protein, putative, expressed
LOC_Os02g03200OsAffx.16839.1.S1_at1/112+1263503..1266099FAD-binding domain-containing protein, putative, expressed
LOC_Os02g03210NANA2+1273228..1275549FAD-binding domain-containing protein, putative, expressed
LOC_Os02g03220Os.51980.1.S1_at11/112+1283155..1288182expressed protein
LOC_Os02g03220Os.49499.1.S1_at2/112+1283155..1288182expressed protein
LOC_Os02g03230Os.11750.1.A1_at11/112+1288992..1292410Nodule membrane protein, putative, expressed
LOC_Os02g03240Os.41695.3.S1_x_at5/112+1295233..1299527transposon protein, putative, Mutator sub-class
LOC_Os02g03240Os.41695.2.S1_x_at5/112+1295233..1299527transposon protein, putative, Mutator sub-class
LOC_Os02g03240Os.41695.5.S1_x_at2/112+1295233..1299527transposon protein, putative, Mutator sub-class
LOC_Os02g03240Os.41695.4.S1_x_at1/112+1295233..1299527transposon protein, putative, Mutator sub-class
LOC_Os02g03250Os.51258.1.S1_at11/112+1302273..1304317expressed protein
LOC_Os02g03260Os.8913.1.S1_at11/112+1304834..1309823homoaconitate hydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51980.1.S1_at--12--7351Chr02:1286828..1286852 (25 bp)
GGAACCGAGTTCTGCCAAAGTCAAG
LOC_Os02g03220
Os.51980.1.S1_at--672--7971Chr02:1287643..1287667 (25 bp)
GGATCGAGCCATCATGTTTCAACTT
LOC_Os02g03220
Os.51980.1.S1_at--79--6531Chr02:1287681..1287705 (25 bp)
GATTTGCCAGTGTGGTTGTGCTGCT
LOC_Os02g03220
Os.51980.1.S1_at--860--9111Chr02:1287699..1287723 (25 bp)
TGCTGCTCTTCCTTTGTACTCAATT
LOC_Os02g03220
Os.51980.1.S1_at--752--6991Chr02:1287714..1287738 (25 bp)
GTACTCAATTCTCATCTTGGTGATG
LOC_Os02g03220
Os.51980.1.S1_at--767--6071Chr02:1287754..1287778 (25 bp)
GAGTAGTGCAATTCTTCTCCCACGG
LOC_Os02g03220
Os.51980.1.S1_at--811--1031Chr02:1287919..1287943 (25 bp)
AGGTGACCCTGAGAAGCTTTAACTT
LOC_Os02g03220
Os.51980.1.S1_at--616--1651Chr02:1288014..1288038 (25 bp)
AGCGAACACGTGATGACGCCATCCT
LOC_Os02g03220
Os.51980.1.S1_at--576--4431Chr02:1288031..1288055 (25 bp)
GCCATCCTTACACTTAGCATTACAT
LOC_Os02g03220
Os.51980.1.S1_at--1118--131Chr02:1288049..1288073 (25 bp)
ATTACATGACTTTCTTGCGTTTCGA
LOC_Os02g03220
Os.51980.1.S1_at--897--9131Chr02:1288064..1288088 (25 bp)
TGCGTTTCGACTTTTCTTTTTGTGT
LOC_Os02g03220
Target Sequence 
GGAACCGAGTTCTGCCAAAGTCAAGCATGTTGAGTTCTCAGAATAATCAAGTGCGATAGTGTAAATATAATATGGTATGA
ATTTGACAATTCTTAAAATGATTCGAACTGATACAAACTGATTTGGATCGAGCCATCATGTTTCAACTTTCAACTGATCA
TTGATTTGCCAGTGTGGTTGTGCTGCTCTTCCTTTGTACTCAATTCTCATCTTGGTGATGCATTAAGGCTGTTTGGAGTA
GTGCAATTCTTCTCCCACGGTACTTCTGTTGAAGCTGGGGAGATGAATACCAGATCTCAAGGCAAAGGCGGGAGCGGAGA
AGGGCAACTAGATCAGGTGACCCTGAGAAGCTTTAACTTAGAACACAAAAAAACTAATGCGATAGAAAATTTTTTGGGGG
GCAATTCATCATGAAGTATTTCTGTACAGAGCGAACACGTGATGACGCCATCCTTACACTTAGCATTACATGACTTTCTT
GCGTTTCGACTTTTCTTTTTGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51980.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis