Browse Element(s) Details


Os.5199.1.S1_at

Description gb:AK070594.1
DB_XREF= gi:32980618
TID=Os.5199.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5199 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023055B18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023055B18, full insert sequence.
FL= gb:AK070594.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0871011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08670Os.54495.1.S1_at5/119+4553930..4554720expressed protein
LOC_Os09g08680OsAffx.6211.1.S1_x_at11/119+4555816..4567790expressed protein
LOC_Os09g08680Os.26513.1.A1_at11/119+4555816..4567790expressed protein
LOC_Os09g08690OsAffx.29768.1.S1_at11/119+4568163..4568663hypothetical protein
LOC_Os09g08700OsAffx.29769.1.S1_at11/119+4570504..4571628hypothetical protein
LOC_Os09g08710Os.5199.1.S1_at11/119+4576706..4579685expressed protein
LOC_Os09g08710Os.5199.2.S1_x_at10/119+4576706..4579685expressed protein
LOC_Os09g08710Os.20593.1.S1_x_at1/119+4576706..4579685expressed protein
LOC_Os09g08720OsAffx.29770.1.S1_at11/119+4591170..4594141NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g08730OsAffx.6212.1.S1_at10/119+4599910..4604598Pumilio-family RNA binding repeat containing protein
LOC_Os09g08730OsAffx.25952.1.S1_s_at2/119+4599910..4604598Pumilio-family RNA binding repeat containing protein
LOC_Os09g08730Os.53576.1.S1_at1/119+4599910..4604598Pumilio-family RNA binding repeat containing protein
LOC_Os09g08730Os.10259.1.S1_at1/119+4599910..4604598Pumilio-family RNA binding repeat containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5199.1.S1_at--785--3671Chr09:4579335..4579359 (25 bp)
CTTTGGCAGGTATAACTCTATCATA
LOC_Os09g08710
Os.5199.1.S1_at--564--351Chr09:4579346..4579370 (25 bp)
ATAACTCTATCATATTCTGCCCTAC
LOC_Os09g08710
Os.5199.1.S1_at--315--9531Chr09:4579351..4579375 (25 bp)
TCTATCATATTCTGCCCTACTTTCA
LOC_Os09g08710
Os.5199.1.S1_at--521--231Chr09:4579357..4579381 (25 bp)
ATATTCTGCCCTACTTTCAGTGCTC
LOC_Os09g08710
Os.5199.1.S1_at--284--9491Chr09:4579361..4579385 (25 bp)
TCTGCCCTACTTTCAGTGCTCTGAA
LOC_Os09g08710
Os.5199.1.S1_at--733--4531Chr09:4579364..4579388 (25 bp)
GCCCTACTTTCAGTGCTCTGAAATT
LOC_Os09g08710
Os.5199.1.S1_at--568--10511Chr09:4579395..4579419 (25 bp)
TTCAAGTGTGAAACCAGTCCTCTTT
LOC_Os09g08710
Os.5199.1.S1_at--444--7471Chr09:4579400..4579424 (25 bp)
GTGTGAAACCAGTCCTCTTTTTATT
LOC_Os09g08710
Os.5199.1.S1_at--388--171Chr09:4579422..4579446 (25 bp)
ATTTTGCAGAAAAGGTGGTCATGGT
LOC_Os09g08710
Os.5199.1.S1_at--85--10291Chr09:4579507..4579531 (25 bp)
TTTCCTGAGATAGTGTTACATGCTT
LOC_Os09g08710
Os.5199.1.S1_at--1047--10171Chr09:4579578..4579602 (25 bp)
TATAGCTAGTTTAGGTTTTCTGAAC
LOC_Os09g08710
Target Sequence 
CTTTGGCAGGTATAACTCTATCATATTCTGCCCTACTTTCAGTGCTCTGAAATTCTGAATTTCAAGTGTGAAACCAGTCC
TCTTTTTATTTTGCAGAAAAGGTGGTCATGGTCTTGAGAAAGGCCAGGCTTTGTTCTGAACTTAGAGATGAGTGAGCTGC
AAACCAGTTTTTTTTCCTGAGATAGTGTTACATGCTTGTATCAATATTTGAAGTGTAGAGATTGAGCCAGAGTCAGAATT
CTATATAGCTAGTTTAGGTTTTCTGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5199.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis