Browse Element(s) Details


Os.5202.1.S1_at

Description gb:AK103294.1
DB_XREF= gi:32988503
TID=Os.5202.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5202 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033125A17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033125A17, full insert sequence.
FL= gb:AK103294.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4543911/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45370Os.35811.1.S1_at11/111+26079146..26082617radical SAM enzyme, Cfr family protein, expressed
LOC_Os01g45380Os.30916.1.S1_at11/111+26084643..26089035protein kinase, putative, expressed
LOC_Os01g45390OsAffx.2237.1.S1_at11/111+26089384..26093287HD domain containing protein, expressed
LOC_Os01g45390Os.25120.1.S1_s_at11/111+26089384..26093287HD domain containing protein, expressed
LOC_Os01g45390Os.25120.1.S1_at11/111+26089384..26093287HD domain containing protein, expressed
LOC_Os01g45400OsAffx.11477.1.S1_x_at11/111+26094018..26094482ubiquitin family protein, putative
LOC_Os01g45400OsAffx.11477.1.S1_at11/111+26094018..26094482ubiquitin family protein, putative
LOC_Os01g45410OsAffx.11478.1.S1_at9/111+26095471..26095944hypothetical protein
LOC_Os01g45420OsAffx.11479.1.S1_at11/111+26098440..26098898ubiquitin family protein, putative, expressed
LOC_Os01g45430OsAffx.2238.1.S1_at11/111+26100801..26103027hypothetical protein
LOC_Os01g45430Os.17986.1.S1_s_at11/111+26100801..26103027hypothetical protein
LOC_Os01g45439Os.5202.1.S1_at11/111+26104446..26109149expressed protein
LOC_Os01g45439OsAffx.9248.1.S1_at4/111+26104446..26109149expressed protein
LOC_Os01g45450OsAffx.9247.1.S1_at11/111+26115550..26117836ATPase, AAA family protein, expressed
LOC_Os01g45460Os.28909.1.S1_at11/111+26119547..26124462Carboxylesterase, putative, expressed
LOC_Os01g45470Os.10486.1.S1_at5/111+26127617..26128012hypothetical protein
LOC_Os01g45480NANA1+26130479..26131332hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5202.1.S1_at--446--251Chr01:26105683..26105707 (25 bp)
ATATCTGGAGAAACCTTGCACATGG
LOC_Os01g45439
Os.5202.1.S1_at--963--3831Chr01:26105642..26105666 (25 bp)
CTGCAGTCAAATTCCTGAGTTCAAA
LOC_Os01g45439
Os.5202.1.S1_at--1151--5111Chr01:26105466..26105487 (22 bp)
GCAAACGTTCATGTACTGGCAGTTA
LOC_Os01g45439
Os.5202.1.S1_at--541--8991Chr01:26104846..26104870 (25 bp)
TGAAGCTCATGTATCACTCTCCTTT
LOC_Os01g45439
Os.5202.1.S1_at--713--10331Chr01:26104824..26104848 (25 bp)
TTTCACTGCCGGTTATCACAGAGCT
LOC_Os01g45439
Os.5202.1.S1_at--657--8471Chr01:26104796..26104820 (25 bp)
TGGCTTAAAATTGGCCGTACAGTTA
LOC_Os01g45439
Os.5202.1.S1_at--643--10191Chr01:26104766..26104790 (25 bp)
TATATCCATCGCTACACTCCTTTTC
LOC_Os01g45439
Os.5202.1.S1_at--280--3811Chr01:26104750..26104774 (25 bp)
CTCCTTTTCTTCATGACCCGATAAA
LOC_Os01g45439
Os.5202.1.S1_at--881--4591Chr01:26104603..26104627 (25 bp)
GCGACATGTTTAGTACCTTTTCTTT
LOC_Os01g45439
Os.5202.1.S1_at--384--4631Chr01:26104576..26104600 (25 bp)
GCGATGTTGCGCTGATATTACTTTT
LOC_Os01g45439
Os.5202.1.S1_at--876--3611Chr01:26104533..26104557 (25 bp)
CTTGTAACTTTACCTTGACTGTAGA
LOC_Os01g45439
Target Sequence 
ATATCTGGAGAAACCTTGCACATGGNTNGAGACANACACAACTGCAGTCAAATTCCTGAGTTCAAATGCGGAGATTTTGT
TGGGATTTCTTNNGATTTNGTCTCTGTTCTCGCGACAACGCAANTCCTATGCAAACGTTCATGTACTGGCAGTTACTGAA
GCTCATGTATCACTCTCCTTTCACTGCCGGTTATCACAGAGCTATCTGGCTTAAAATTGGCCGTACAGTTAATCCCTATA
TCCATCGCTACACTCCTTTTCTTCATGACCCGATAAATGCTGGCATGAGATGGTGGTTCAGGTAGCATGGATATGGCTCA
ATTAATCATGTAAAGGTGTTTTTGGTTACAGTTCACAGTTAACACATGGAGGATCTTTTCAGTAAGTTGTAGTTTGCGAG
CGACATGTTTAGTACCTTTTCTTTTTTGCGATGTTGCGCTGATATTACTTTTAGTTACTGACAAGTAATTCTTGTAACTT
TACCTTGACTGTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5202.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis