Browse Element(s) Details


Os.52024.1.S1_at

Description gb:AK064556.1
DB_XREF= gi:32974574
TID=Os.52024.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52024 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-112-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-C05, full insert sequence.
FL= gb:AK064556.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1244011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12400Os.54164.1.S1_at11/112+6468826..6472843Leucine Rich Repeat family protein, expressed
LOC_Os02g12410Os.53025.1.S1_at1/112+6474514..6474992U-box domain-containing protein, putative
LOC_Os02g12420Os.53706.1.S1_at11/112+6476683..6480097Leucine Rich Repeat family protein, expressed
LOC_Os02g12430NANA2+6482468..6483370hypothetical protein
LOC_Os02g12440Os.52024.1.S1_at11/112+6488454..6490577Protein kinase domain containing protein, expressed
LOC_Os02g12450OsAffx.12003.1.S1_at11/112+6491390..6495136Leucine Rich Repeat family protein
LOC_Os02g12450OsAffx.12003.2.S1_s_at11/112+6491390..6495136Leucine Rich Repeat family protein
LOC_Os02g12450OsAffx.12003.2.S1_at1/112+6491390..6495136Leucine Rich Repeat family protein
LOC_Os02g12460Os.52655.1.S1_x_at2/112+6496710..6497737hypothetical protein
LOC_Os02g12460OsAffx.19426.1.S1_x_at1/112+6496710..6497737hypothetical protein
LOC_Os02g12470Os.30575.1.A1_at5/112+6502150..6504010hypothetical protein
LOC_Os02g12480Os.7929.2.S1_a_at11/112+6510378..6515996expressed protein
LOC_Os02g12480Os.7929.4.S1_x_at2/112+6510378..6515996expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52024.1.S1_at--1081--5011Chr02:6490009..6490033 (25 bp)
GCAGGGCATCCAATTAGCTACTCAT
LOC_Os02g12440
Os.52024.1.S1_at--543--151Chr02:6490021..6490045 (25 bp)
ATTAGCTACTCATTTTCGCTCTTCG
LOC_Os02g12440
Os.52024.1.S1_at--102--10651Chr02:6490035..6490059 (25 bp)
TTCGCTCTTCGCACATATAATTCTT
LOC_Os02g12440
Os.52024.1.S1_at--1074--2111Chr02:6490085..6490109 (25 bp)
ACATGGCAGTGCCTGACTTGGCTAA
LOC_Os02g12440
Os.52024.1.S1_at--865--9991Chr02:6490145..6490169 (25 bp)
TAGCGACGTAAGAACCTCCATCTGT
LOC_Os02g12440
Os.52024.1.S1_at--96--2251Chr02:6490233..6490257 (25 bp)
AAATTCAACGAATCTCCCACAAAGT
LOC_Os02g12440
Os.52024.1.S1_at--757--8071Chr02:6490309..6490333 (25 bp)
GGAGCATCAACCCATGAAGCAGTAC
LOC_Os02g12440
Os.52024.1.S1_at--119--6891Chr02:6490337..6490361 (25 bp)
GTATTTCCAGTGCAGGTCATCTTGA
LOC_Os02g12440
Os.52024.1.S1_at--828--2891Chr02:6490413..6490437 (25 bp)
AAGGCCCTGGATGTGGTCTATTCTA
LOC_Os02g12440
Os.52024.1.S1_at--447--7971Chr02:6490480..6490504 (25 bp)
GGATCGATTGATCACAGCCGAATTT
LOC_Os02g12440
Os.52024.1.S1_at--772--8211Chr02:6490513..6490537 (25 bp)
GGAATCTTGTCTTGTCCATGCAAAA
LOC_Os02g12440
Target Sequence 
GCAGGGCATCCAATTAGCTACTCATTTTCGCTCTTCGCACATATAATTCTTGACTGAGCAATTCATAAACATGTCAACAT
GGCAGTGCCTGACTTGGCTAATACTGTTGACAACTGTTGCAATAAGCAGCACAAGATAGCGACGTAAGAACCTCCATCTG
TCATAGAAGTAGACATGAGAATTGTTAACACAACTTTTGTTCTGAATATTGGAATTTCTTGTTCAAATTCAACGAATCTC
CCACAAAGTAAGAGATGCAACCAATAAGAAAAAGGTTTAACAGGGATTTGCTCCGAGAATGGAGCATCAACCCATGAAGC
AGTACAAGGTATTTCCAGTGCAGGTCATCTTGAAACTATTGCACAACTCAAAAAAGGTCAATCTTGATCCAGGGGCTCTT
GGCTAAGGCCCTGGATGTGGTCTATTCTACTGTAGACTGGCCCTCCCCTTAAGAGTTAGGTTTAGAATTTTGGATCGATT
GATCACAGCCGAATTTGGAATGCAGGAATCTTGTCTTGTCCATGCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52024.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis