Browse Element(s) Details


Os.52025.1.S1_at

Description gb:AK064557.1
DB_XREF= gi:32974575
TID=Os.52025.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52025 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-112-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-C06, full insert sequence.
FL= gb:AK064557.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1973011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g19710OsAffx.18946.1.S1_at11/1111+11328691..11332813hypothetical protein
LOC_Os11g19720Os.53689.1.S1_at11/1111+11339385..11346231recA protein, expressed
LOC_Os11g19720Os.8839.2.S1_at1/1111+11339385..11346231recA protein, expressed
LOC_Os11g19720Os.8839.2.S1_x_at1/1111+11339385..11346231recA protein, expressed
LOC_Os11g19730OsAffx.18947.1.S1_x_at11/1111+11350958..11354295expressed protein
LOC_Os11g19730Os.52025.1.S1_at11/1111+11350958..11354295expressed protein
LOC_Os11g19730Os.53168.1.S2_at1/1111+11350958..11354295expressed protein
LOC_Os11g19740NANA11+11357009..11357236hypothetical protein
LOC_Os11g19750OsAffx.31066.1.S1_at11/1111+11358928..11359502hypothetical protein
LOC_Os11g19760OsAffx.31067.1.S1_at11/1111+11360832..11361489hypothetical protein
LOC_Os11g19770NANA11+11369451..11370238Argininosuccinate synthase, chloroplast precursor, putative
LOC_Os11g19780OsAffx.18948.1.S1_at11/1111+11373383..11374708O-methyltransferase ZRP4, putative
LOC_Os11g19780Os.55345.1.S1_at1/1111+11373383..11374708O-methyltransferase ZRP4, putative

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0000175molecular_function3'-5'-exoribonuclease activity
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52025.1.S1_at--57--4791Chr11:11354048..11354072 (25 bp)
GCTGCGCCATGGTAAGGTTTGTGCA
LOC_Os11g19730
Os.52025.1.S1_at--205--6871Chr11:11354064..11354088 (25 bp)
GTTTGTGCAAACTAATTGGTATGCT
LOC_Os11g19730
Os.52025.1.S1_at--1072--7851Chr11:11354081..11354105 (25 bp)
GGTATGCTTGCGTATTATTTAGTTA
LOC_Os11g19730
Os.52025.1.S1_at--793--8871Chr11:11354107..11354131 (25 bp)
TGATGGTATGTGAATATTGCTAGAT
LOC_Os11g19730
Os.52025.1.S1_at--612--31Chr11:11354122..11354146 (25 bp)
ATTGCTAGATGTTGTGAGTTACTAA
LOC_Os11g19730
Os.52025.1.S1_at--596--6071Chr11:11354137..11354161 (25 bp)
GAGTTACTAATGCTAGTGCTGCTGA
LOC_Os11g19730
Os.52025.1.S1_at--336--6871Chr11:11354171..11354195 (25 bp)
GTTTGTGTGATGGTTTCTTTTGGTA
LOC_Os11g19730
Os.52025.1.S1_at--403--9551Chr11:11354186..11354210 (25 bp)
TCTTTTGGTATGAGGAGAGCACCCA
LOC_Os11g19730
Os.52025.1.S1_at--815--971Chr11:11354198..11354222 (25 bp)
AGGAGAGCACCCAACGTATGTAATG
LOC_Os11g19730
Os.52025.1.S1_at--1008--7031Chr11:11354217..11354241 (25 bp)
GTAATGGGTCGTTGTTGCCCTTTAT
LOC_Os11g19730
Os.52025.1.S1_at--533--9171Chr11:11354232..11354256 (25 bp)
TGCCCTTTATGCAAGACATCTTTTG
LOC_Os11g19730
Target Sequence 
GCTGCGCCATGGTAAGGTTTGTGCAAACTAATTGGTATGCTTGCGTATTATTTAGTTACTGATGGTATGTGAATATTGCT
AGATGTTGTGAGTTACTAATGCTAGTGCTGCTGAATCTCTTTAGTTTGTGTGATGGTTTCTTTTGGTATGAGGAGAGCAC
CCAACGTATGTAATGGGTCGTTGTTGCCCTTTATGCAAGACATCTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52025.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis