Browse Element(s) Details


Os.53689.1.S1_at

Description gb:AK073931.1
DB_XREF= gi:32983954
TID=Os.53689.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.53689 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033071A21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033071A21, full insert sequence.
FL= gb:AK073931.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1972011/11recA protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g19690Os.36749.2.A1_at1/1111+11312771..11316001transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19690OsAffx.25001.1.S1_at1/1111+11312771..11316001transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19690Os.50043.1.A1_at1/1111+11312771..11316001transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19700Os.9986.1.S1_at2/1111+11319876..11325715Cycloeucalenol cycloisomerase, putative, expressed
LOC_Os11g19710OsAffx.18946.1.S1_at11/1111+11328691..11332813hypothetical protein
LOC_Os11g19720Os.53689.1.S1_at11/1111+11339385..11346231recA protein, expressed
LOC_Os11g19720Os.8839.2.S1_at1/1111+11339385..11346231recA protein, expressed
LOC_Os11g19720Os.8839.2.S1_x_at1/1111+11339385..11346231recA protein, expressed
LOC_Os11g19730OsAffx.18947.1.S1_x_at11/1111+11350958..11354295expressed protein
LOC_Os11g19730Os.52025.1.S1_at11/1111+11350958..11354295expressed protein
LOC_Os11g19730Os.53168.1.S2_at1/1111+11350958..11354295expressed protein
LOC_Os11g19740NANA11+11357009..11357236hypothetical protein
LOC_Os11g19750OsAffx.31066.1.S1_at11/1111+11358928..11359502hypothetical protein
LOC_Os11g19760OsAffx.31067.1.S1_at11/1111+11360832..11361489hypothetical protein
LOC_Os11g19770NANA11+11369451..11370238Argininosuccinate synthase, chloroplast precursor, putative

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0006310biological_processDNA recombination
GO:0009432biological_processSOS response
GO:0003677molecular_functionDNA binding
GO:0008094molecular_functionDNA-dependent ATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53689.1.S1_at--429--111Chr11:11339960..11339984 (25 bp)
ATTCTATCACTTGAACGGGCAAAAT
LOC_Os11g19720
Os.53689.1.S1_at--101--631Chr11:11339922..11339946 (25 bp)
ATGCTCTTAAATGTTATCTCGCTGA
LOC_Os11g19720
Os.53689.1.S1_at--1146--2451Chr11:11339896..11339920 (25 bp)
AACAAGAATGTCCTGGAATCTCTGA
LOC_Os11g19720
Os.53689.1.S1_at--568--2711Chr11:11339855..11339879 (25 bp)
AAGCATAATGCAACAGGAGTCCCAT
LOC_Os11g19720
Os.53689.1.S1_at--991--651Chr11:11339848..11339872 (25 bp)
ATGCAACAGGAGTCCCATCCAGATA
LOC_Os11g19720
Os.53689.1.S1_at--728--8031Chr11:11339840..11339864 (25 bp)
GGAGTCCCATCCAGATAGAAACATG
LOC_Os11g19720
Os.53689.1.S1_at--1146--9651Chr11:11339773..11339797 (25 bp)
TCAGCAACAGATGAACAAGTACCTG
LOC_Os11g19720
Os.53689.1.S1_at--16--1331Chr11:11339747..11339771 (25 bp)
AGAGGTTGAGGCCTGAAGCAATATA
LOC_Os11g19720
Os.53689.1.S1_at--644--5191Chr11:11339730..11339754 (25 bp)
GCAATATAGCAGTATCCTTTTTCTT
LOC_Os11g19720
Os.53689.1.S1_at--26--4331Chr11:11339579..11339603 (25 bp)
CCATTTTGCTGTGTACATGCCATTG
LOC_Os11g19720
Os.53689.1.S1_at--823--9871Chr11:11339566..11339590 (25 bp)
TACATGCCATTGTACATATTTATCC
LOC_Os11g19720
Target Sequence 
ATTCTATCACTTGAACGGGCAAAATTTCCATGGAAAGGATGCTCTTAAATGTTATCTCGCTGAAAACAAGAATGTCCTGG
AATCTCTGATGTCAATGATAAAGGAAAGCATAATGCAACAGGAGTCCCATCCAGATAGAAACATGGAGGATGCCAACCCA
GATACGNGCATAACAGAAGAGTTCGNTTCAGCAACAGATGAACAAGTACCTGNAGAGGTTGAGGCCTGAAGCAATATAGC
AGTATCCTTTTTCTTTTTCNTTTTCNTTTTCCTGCAAGACTAGNGTACATATGCCACGNTTCATCTCTTCTTAACTTGCA
NGGTTTCTAGCTAAGCTGNGCGNCAATAACCAAGTAAGGATAAAATGTAAATAACTTTTCNCCATTTTGCTGTGTACATG
CCATTGTACATATTTATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53689.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis