Browse Element(s) Details


OsAffx.18946.1.S1_at

Description tigr:9639.m01840
TID=OsAffx.18946.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1971011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g19660NANA11+11303299..11305888hypothetical protein
LOC_Os11g19670NANA11+11307431..11307996hypothetical protein
LOC_Os11g19680OsAffx.22896.1.S1_x_at1/1111+11309356..11309790transposon protein, putative, unclassified
LOC_Os11g19690Os.36749.2.A1_at1/1111+11312771..11316001transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19690OsAffx.25001.1.S1_at1/1111+11312771..11316001transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19690Os.50043.1.A1_at1/1111+11312771..11316001transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19700Os.9986.1.S1_at2/1111+11319876..11325715Cycloeucalenol cycloisomerase, putative, expressed
LOC_Os11g19710OsAffx.18946.1.S1_at11/1111+11328691..11332813hypothetical protein
LOC_Os11g19720Os.53689.1.S1_at11/1111+11339385..11346231recA protein, expressed
LOC_Os11g19720Os.8839.2.S1_at1/1111+11339385..11346231recA protein, expressed
LOC_Os11g19720Os.8839.2.S1_x_at1/1111+11339385..11346231recA protein, expressed
LOC_Os11g19730OsAffx.18947.1.S1_x_at11/1111+11350958..11354295expressed protein
LOC_Os11g19730Os.52025.1.S1_at11/1111+11350958..11354295expressed protein
LOC_Os11g19730Os.53168.1.S2_at1/1111+11350958..11354295expressed protein
LOC_Os11g19740NANA11+11357009..11357236hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18946.1.S1_at--1102--2771Chr11:11330844..11330868 (25 bp)
AAGAGAACTCTCGTCAGTCGTCACT
LOC_Os11g19710
OsAffx.18946.1.S1_at--1063--1134Chr08:24354794..24354815 (22 bp)
AGTCGTCACTAGTCAGCAGCCTTAA
NONE
OsAffx.18946.1.S1_at--500--2192Chr01:32510064..32510087 (24 bp)
ACACACGACACGCTTTCAGAGAGAA
NONE
OsAffx.18946.1.S1_at--289--2071Chr11:11329405..11329429 (25 bp)
ACATTCTGCTTATCCCTGGAAGTTC
LOC_Os11g19710
OsAffx.18946.1.S1_at--559--6231Chr11:11329350..11329374 (25 bp)
GATGGCAGGCGATCCCGAGAAGTTC
LOC_Os11g19710
OsAffx.18946.1.S1_at--100--3151Chr11:11329306..11329330 (25 bp)
AATTCTAATGGGTGCACGGTCGTGC
LOC_Os11g19710
OsAffx.18946.1.S1_at--1081--3031Chr11:11328968..11329298 (25 bp)
AATCCGCGTGTTGCACATTGTCCGA
LOC_Os11g19710
OsAffx.18946.1.S1_at--318--571Chr11:11328939..11328963 (25 bp)
ATCCTCTGCCTCTACTTTTTAATTG
LOC_Os11g19710
OsAffx.18946.1.S1_at--857--7751Chr11:11328906..11328930 (25 bp)
GGTGATCCATTAGGGCTTGTGCTTT
LOC_Os11g19710
OsAffx.18946.1.S1_at--487--2931Chr11:11328783..11328807 (25 bp)
AAGGCCCTTGCCGAAGACTATGGAT
LOC_Os11g19710
OsAffx.18946.1.S1_at--466--6591Chr11:11328736..11328760 (25 bp)
GATTGATGACCTTTTGCAGCGATCT
LOC_Os11g19710
Target Sequence 
AAGAGAACTCTCGTCAGTCGTCACTAGTCAGCAGCCTTAATGTGAAAGGACAACACACGACACGCTTTCAGAGAGAAAAA
GAATCGGGCGCACATTCTGCTTATCCCTGGAAGTTCATGTGGGAGGGGAGCGATTGTGTGGGGGCAGATGGCAGGCGATC
CCGAGAAGTTCGCATGGGAAGGGAACCGAAAATTCTAATGGGTGCACGGTCGTGCGTGACCCAATCCGCGTGTTGCACAT
TGTCCGACTTCATCCTCTGCCTCTACTTTTTAATTGCAAAGAGAGGTGATCCATTAGGGCTTGTGCTTTCCCGTGGTGCC
GCCGCTGCCTTTCCCATGGAAACAACCCCTACCTCCTCCGCTGCTACTCCCACCATGACTACAGGAGATGGAGACTCTCC
TCCAGCCAAGGCCCTTGCCGAAGACTATGGATTGTACTGGACAGTGCAGCAGAAGATTGATGACCTTTTGCAGCGATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18946.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis