Browse Element(s) Details


Os.52048.1.S1_at

Description gb:AK064615.1
DB_XREF= gi:32974633
TID=Os.52048.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52048 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-113-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-C04, full insert sequence.
FL= gb:AK064615.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0982011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09770Os.27546.1.A1_at11/112+5038908..5043308expressed protein
LOC_Os02g09780Os.57154.1.S1_at11/112+5045332..5047098expressed protein
LOC_Os02g09790OsAffx.24178.1.S1_at11/112+5048653..5051394NB-ARC domain containing protein, expressed
LOC_Os02g09800OsAffx.15994.2.S1_at11/112+5054306..5058036pentatricopeptide, putative
LOC_Os02g09800OsAffx.15994.1.S1_x_at2/112+5054306..5058036pentatricopeptide, putative
LOC_Os02g09810Os.25128.1.S1_at11/112+5058734..5061962amino acid transporter family protein, putative, expressed
LOC_Os02g09820Os.52048.1.S1_at11/112+5063134..5066606Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g09830OsAffx.11963.1.S1_at11/112+5067202..5068039bZIP transcription factor family protein, expressed
LOC_Os02g09840Os.20243.1.S1_at11/112+5071340..5075444calcium-binding EF hand family protein, putative, expressed
LOC_Os02g09840OsAffx.11964.1.S1_at11/112+5071340..5075444calcium-binding EF hand family protein, putative, expressed
LOC_Os02g09850Os.51629.1.S1_at10/112+5079074..5079709expressed protein
LOC_Os02g09860NANA2+5090349..5091312retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0016567biological_processprotein ubiquitination
GO:0005737cellular_componentcytoplasm
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52048.1.S1_at--371--7631Chr02:5065022..5065046 (25 bp)
GGGACTGTATCTGGCCATGGTTAAC
LOC_Os02g09820
Os.52048.1.S1_at--258--7891Chr02:5065040..5065064 (25 bp)
GGTTAACTATCAGGACCACTTGCCC
LOC_Os02g09820
Os.52048.1.S1_at--742--4251Chr02:5065071..5065095 (25 bp)
CCGGCACCAAGTTCGCACTGAAGAT
LOC_Os02g09820
Os.52048.1.S1_at--258--2471Chr02:5065106..5065130 (25 bp)
AACAACGTATGGCTCGGCGCGTGAT
LOC_Os02g09820
Os.52048.1.S1_at--690--8391Chr02:5065121..5065145 (25 bp)
GGCGCGTGATTGTTCTAGCAGCAGT
LOC_Os02g09820
Os.52048.1.S1_at--70--8551Chr02:5065145..5065169 (25 bp)
TGGAGCATCAGGGTGCACCGGCACA
LOC_Os02g09820
Os.52048.1.S1_at--59--2531Chr02:5066305..5066329 (25 bp)
AACTTCATTTTGATGCGGTCCCAGT
LOC_Os02g09820
Os.52048.1.S1_at--689--1191Chr02:5066497..5066521 (25 bp)
AGTAGTTCGATCCACTCATTTTCTC
LOC_Os02g09820
Os.52048.1.S1_at--394--3791Chr02:5066519..5066543 (25 bp)
CTCGTTCTTCGGCTCGTATGAATGA
LOC_Os02g09820
Os.52048.1.S1_at--1092--1231Chr02:5066546..5066570 (25 bp)
AGTTGTCGGTTATCTTCAAGGCTCT
LOC_Os02g09820
Os.52048.1.S1_at--243--3211Chr02:5066562..5066586 (25 bp)
CAAGGCTCTTGCACTAATCTGATTA
LOC_Os02g09820
Target Sequence 
GGGACTGTATCTGGCCATGGTTAACTATCAGGACCACTTGCCCTGTCTGCCGGCACCAAGTTCGCACTGAAGATGACGAT
TATGAACAACGTATGGCTCGGCGCGTGATTGTTCTAGCAGCAGTGGAGCATCAGGGTGCACCGGCACAGGGCTGTGGAGA
CAGCGCAACCATGGGTGCTGAAGGCGCAAGTGAATGTGTGGTAGAAAATGGACCTGAGAAAACTTCATTTTGATGCGGTC
CCAGTATTTGGTATGATGATCAGGCAGCTGAGACAAGAAACTGAACTGACGTAGGTAGAGGGACCCCCCAACTCCCTTGG
AATGTTGGCAGGAAAACTGTACCGGCATCCAACATTTTGGCTAACACTCAGCATATTGTTGTCCTATGATATGCTGTAAA
TGTACAAAACTAAGTAGTTCGATCCACTCATTTTCTCGTTCTTCGGCTCGTATGAATGATGAGTTGTCGGTTATCTTCAA
GGCTCTTGCACTAATCTGATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52048.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis