Browse Element(s) Details

Os.52049.1.S1_at

Description

gb:AK064617.1
DB_XREF= gi:32974635
TID=Os.52049.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52049 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-113-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-C07, full insert sequence.
FL= gb:AK064617.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g32420	2/11	hypothetical protein
LOC_Os10g09529	1/11	hypothetical protein
LOC_Os11g17830	1/11	transposon protein, putative, Mutator sub-class
LOC_Os08g11760	1/11	expressed protein
LOC_Os05g39270	1/11	hypothetical protein
LOC_Os02g25430	1/11	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g11500	1/11	retrotransposon protein, putative, unclassified

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g32360	NA	NA	6	+	18835529..18835984	hypothetical protein
LOC_Os06g32370	OsAffx.4981.1.S1_at	3/11	6	+	18836880..18837326	Plant thionin family protein
LOC_Os06g32370	Os.23224.1.S1_s_at	1/11	6	+	18836880..18837326	Plant thionin family protein
LOC_Os06g32379	NA	NA	6	+	18838624..18839511	NA
LOC_Os06g32390	Os.24831.3.S1_x_at	7/11	6	+	18847648..18851152	retrotransposon protein, putative, unclassified
LOC_Os06g32390	Os.24831.1.S1_x_at	7/11	6	+	18847648..18851152	retrotransposon protein, putative, unclassified
LOC_Os06g32390	Os.24831.4.S1_x_at	2/11	6	+	18847648..18851152	retrotransposon protein, putative, unclassified
LOC_Os06g32390	Os.24831.3.S1_s_at	1/11	6	+	18847648..18851152	retrotransposon protein, putative, unclassified
LOC_Os06g32390	Os.23706.1.A1_x_at	1/11	6	+	18847648..18851152	retrotransposon protein, putative, unclassified
LOC_Os06g32400	Os.53142.1.S1_at	3/11	6	+	18854695..18856677	hypothetical protein
LOC_Os06g32410	NA	NA	6	+	18858461..18858892	hypothetical protein
LOC_Os06g32420	OsAffx.15698.1.S1_x_at	6/11	6	+	18860217..18861907	hypothetical protein
LOC_Os06g32420	OsAffx.15698.1.S1_at	3/11	6	+	18860217..18861907	hypothetical protein
LOC_Os06g32420	Os.52049.1.S1_at	2/11	6	+	18860217..18861907	hypothetical protein
LOC_Os06g32430	NA	NA	6	+	18862722..18864903	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g32440	NA	NA	6	+	18866123..18866659	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g32450	NA	NA	6	+	18869093..18872170	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g32460	NA	NA	6	+	18872479..18873015	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g32470	NA	NA	6	+	18876374..18881847	retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os06g32480	OsAffx.15700.1.S1_at	10/11	6	+	18883969..18884330	hypothetical protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.52049.1.S1_at--857--719	4	Chr08:16315232..16315256 (25 bp)	GTCGTCCGTCGTCGTTTGTCGTATC	NONE
Os.52049.1.S1_at--605--941	6	Chr08:16315240..16315264 (25 bp)	TCGTCGTTTGTCGTATCGGTGAGCA	NONE
Os.52049.1.S1_at--562--401	4	Chr08:12016301..12016323 (23 bp)	CGTTTGTCGTATCGGTGAGCACCAT	NONE
Os.52049.1.S1_at--912--943	3	Chr02:13272321..13272345 (25 bp)	TCGGTGAGCACCATTGAGTTCGCAA	NONE
Os.52049.1.S1_at--867--889	7	Chr12:11929923..11929947 (25 bp)	TGAGTTCGCAATGTTGTCCTCTACG	NONE
Os.52049.1.S1_at--437--519	2	Chr02:13272342..13272366 (25 bp)	GCAATGTTGTCCTCTACGCGTATGT	NONE
Os.52049.1.S1_at--382--73	1	Chr02:13272345..13272369 (25 bp)	ATGTTGTCCTCTACGCGTATGTGTC	NONE
Os.52049.1.S1_at--352--991	1	Chr02:13272356..13272380 (25 bp)	TACGCGTATGTGTCCTCCAAAAGTC	NONE
Os.52049.1.S1_at--436--1011	1	Chr02:13272362..13272386 (25 bp)	TATGTGTCCTCCAAAAGTCCGGCCG	NONE
Os.52049.1.S1_at--695--381	5	Chr02:13272426..13272450 (25 bp)	CTGCCGTCGATGACGTCATGACGTC	NONE
Os.52049.1.S1_at--966--25	131	Chr12:9650186..9650210 (25 bp)	ATAGATTAAATCTTCGGAAATTCAT	NONE

Target Sequence

GTCGTCCGTCGTCGTTTGTCGTATCGGTGAGCACCATTGAGTTCGCAATGTTGTCCTCTACGCGTATGTGTCCTCCAAAA
GTCCGGCCGACCACCCTAGCTCCGGCGAGGTCGCCACCCGTGCCGTGGCTGCCGTCGATGACGTCATGACGTCATCATCT
CCTCTTTTTCAGTTTTTTTTAATAGATTAAATCTTCGGAAATTCAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis