Browse Element(s) Details


Os.52075.1.S1_at

Description gb:AK064670.1
DB_XREF= gi:32974688
TID=Os.52075.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52075 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-115-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-E02, full insert sequence.
FL= gb:AK064670.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1750011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17432OsAffx.12898.1.S1_at11/113+9678228..9679442pre-mRNA splicing factor ATP-dependent RNA helicase mog-4, putative
LOC_Os03g17440Os.17031.1.S1_at11/113+9679555..9682476expressed protein
LOC_Os03g17450Os.47468.1.A1_s_at11/113+9682748..9686229expressed protein
LOC_Os03g17450Os.46888.1.S1_at11/113+9682748..9686229expressed protein
LOC_Os03g17460Os.38428.1.S1_at11/113+9687259..9689143IN2-1 protein, putative, expressed
LOC_Os03g17470Os.27671.1.S1_at11/113+9691275..9693994IN2-1 protein, putative, expressed
LOC_Os03g17480Os.2376.1.S1_at9/113+9696304..9698958IN2-1 protein, putative, expressed
LOC_Os03g17490Os.48944.1.A1_at11/113+9700976..9704055expressed protein
LOC_Os03g17500Os.52075.1.S1_at11/113+9704342..9706595expressed protein
LOC_Os03g17510Os.54308.1.S1_at11/113+9709492..9711997pentatricopeptide, putative, expressed
LOC_Os03g17520Os.6197.1.S1_at11/113+9712198..9716610CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase family protein, expressed
LOC_Os03g17530OsAffx.25122.1.S1_at11/113+9718076..9718633hypothetical protein
LOC_Os03g17540Os.40027.1.A1_at10/113+9722817..9729772TBC domain containing protein, expressed
LOC_Os03g17540Os.27859.1.S1_at1/113+9722817..9729772TBC domain containing protein, expressed
LOC_Os03g17550Os.23533.1.S1_at11/113+9730756..9734808Serine/threonine-protein kinase RLCKVII, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52075.1.S1_at--133--2051Chr03:9704907..9704931 (25 bp)
ACTTCGGCTCATCAAAATCCCAAGA
LOC_Os03g17500
Os.52075.1.S1_at--51--1871Chr03:9704865..9704889 (25 bp)
ACGACGACAGGCTAGCGCTGGTGCT
LOC_Os03g17500
Os.52075.1.S1_at--663--7851Chr03:9704840..9704864 (25 bp)
GGTAGACCCGCAGCCGAATGCAGAA
LOC_Os03g17500
Os.52075.1.S1_at--1137--251Chr03:9704799..9704823 (25 bp)
ATATGCGTATCGATATCCAAGCACG
LOC_Os03g17500
Os.52075.1.S1_at--1001--891Chr03:9704730..9704754 (25 bp)
AGGCGAATGAGCTCGCGATCGTGCT
LOC_Os03g17500
Os.52075.1.S1_at--664--5931Chr03:9704608..9704632 (25 bp)
GAGCAGCTGCGGTACACGATCGAGA
LOC_Os03g17500
Os.52075.1.S1_at--987--1551Chr03:9704556..9704580 (25 bp)
AGCTTTGCGGCCACTGTTGAGAGCG
LOC_Os03g17500
Os.52075.1.S1_at--514--9031Chr03:9704530..9704554 (25 bp)
TGCACCTCGTCAGTTTTGAGCAGCG
LOC_Os03g17500
Os.52075.1.S1_at--332--4811Chr03:9704505..9704529 (25 bp)
GCTCTTGCTAGTATTTGCCACGATA
LOC_Os03g17500
Os.52075.1.S1_at--1054--3071Chr03:9704427..9704451 (25 bp)
AATAAGATTTTGCTCCCGTGGCTGT
LOC_Os03g17500
Os.52075.1.S1_at--1142--7031Chr03:9704363..9704387 (25 bp)
GTACAATTTGTTCTCCATCTGTCAA
LOC_Os03g17500
Target Sequence 
ACTTCGGCTCATCAAAATCCCAAGATAACCAACGCGACGAGGACGACGACAGGCTAGCGCTGGTGCTGGTAGACCCGCAG
CCGAATGCAGAAACAGGCAACGAAGACTATATGCGTATCGATATCCAAGCACGGAAGGCTCAGGCCGAGCCCAGAGAGGG
AGACGGCGAAATGGAGGAGGCGAATGAGCTCGCGATCGTGCTCGCGGACCCGCAACCCGAGCCCAAGGCGGAGCCTGCGG
CGACGGCGAGGCCGCGCAACGACGTGCAGTCCGTGCTCCTCGCGCTGCGGCAGGTGAAGGAGCAGCTGCGGTACACGATC
GAGAGGAGGTCGGAGCTCGTCGCCCACCAGGAGCTTTGCGGCCACTGTTGAGAGCGCTGCACCTCGTCAGTTTTGAGCAG
CGGCTCTTGCTAGTATTTGCCACGATACTACTAGAGTTCTTGACAGTGATAGTGTAGTAGAGTATTTGTAGAGAAATTGG
AATAAGATTTTGCTCCCGTGGCTGTGTTACATACACGGGAGACAAACTGAGATAATTCAGTTGTGTACAATTTGTTCTCC
ATCTGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52075.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis