Browse Element(s) Details


Os.52081.1.S1_at

Description gb:AK064681.1
DB_XREF= gi:32974699
TID=Os.52081.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52081 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-A05, full insert sequence.
FL= gb:AK064681.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3922010/11GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os11g254001/11retrotransposon protein, putative, unclassified
LOC_Os02g280401/11lipase class 3 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39170OsAffx.27234.1.S1_at11/115+22887046..22888595hypothetical protein
LOC_Os05g39180Os.50520.1.S1_at11/115+22891311..22894850expressed protein
LOC_Os05g39190Os.54521.1.S1_at11/115+22895418..22898968expressed protein
LOC_Os05g39200OsAffx.15023.1.S1_at10/115+22900867..22903188hypothetical protein
LOC_Os05g39210Os.56330.1.S1_at11/115+22905044..22908281expressed protein
LOC_Os05g39220Os.52081.1.S1_at10/115+22909339..22911266GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g39220OsAffx.23696.1.S1_x_at1/115+22909339..22911266GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g39230Os.8138.1.S1_at11/115+22913774..22922353expressed protein
LOC_Os05g39240Os.20364.1.S1_at11/115+22926028..22930243Ammonium transporter 2, putative, expressed
LOC_Os05g39240Os.54723.1.S1_at1/115+22926028..22930243Ammonium transporter 2, putative, expressed
LOC_Os05g39250OsAffx.4557.1.S1_s_at11/115+22930379..22931153expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52081.1.S1_at--476--4791Chr05:22910078..22910102 (25 bp)
GCTCCAGAAGGCACTCTCCAAGCTG
LOC_Os05g39220
Os.52081.1.S1_at--5--6391NONE
GATCGCCTACGTCGATATCTACACC
NONE
Os.52081.1.S1_at--429--1391Chr05:22909779..22910001 (25 bp)
AGAAATACGGTTTCACCCAGGCGAG
LOC_Os05g39220
Os.52081.1.S1_at--853--9331Chr05:22909684..22909708 (25 bp)
TCGCCGTCGCAGTACATGTTCTTCG
LOC_Os05g39220
Os.52081.1.S1_at--949--1171Chr05:22909674..22909698 (25 bp)
AGTACATGTTCTTCGACTCCGTGCA
LOC_Os05g39220
Os.52081.1.S1_at--619--3731Chr05:22909634..22909658 (25 bp)
CTACAAGGCTCTCGCCGATGAGATC
LOC_Os05g39220
Os.52081.1.S1_at--901--691Chr05:22909617..22909641 (25 bp)
ATGAGATCGTCAAGTCGCACGTGCC
LOC_Os05g39220
Os.52081.1.S1_at--380--5091Chr05:22909601..22909625 (25 bp)
GCACGTGCCGCAGCTCATGCAGTAA
LOC_Os05g39220
Os.52081.1.S1_at--208--471Chr05:22909585..22909609 (25 bp)
ATGCAGTAATTAGATGGTCCGTAGC
LOC_Os05g39220
Os.52081.1.S1_at--1043--7791Chr05:22909570..22909594 (25 bp)
GGTCCGTAGCATAGTTTAGTGTCCA
LOC_Os05g39220
Os.52081.1.S1_at--901--98116Chr09:8295325..8295387 (25 bp)
TAAACTCGCAAATCTCGGTCCCTAA
NONE
Target Sequence 
GCTCCAGAAGGCACTCTCCAAGCTGGAGGCCGACTCACCCGGCGCCAAGATCGCCTACGTCGATATCTACACCCCTCTCA
AGGACATGGCCGAGAACCCCAAGAAATACGGTTTCACCCAGGCGAGCCTCGGCTGCTGCGGGACGGGGATGATGGAGATG
GGGGCGCTCTGCACCAGCGCGCTGCCGCAGTGCCAGTCGCCGTCGCAGTACATGTTCTTCGACTCCGTGCACCCGACGCA
GGCCACCTACAAGGCTCTCGCCGATGAGATCGTCAAGTCGCACGTGCCGCAGCTCATGCAGTAATTAGATGGTCCGTAGC
ATAGTTTAGTGTCCAGTGTGTTAAACTAATTATTAAGAATAATAGATATGCATGGTTCAGTAGCTATAGAGTTTTTGCAT
AGAGTAAAGTCCATCACCGGTCCCTAAACTTGTACCGCTGTGTCATCCCGGTCCCTAAACTCGCAAATCTCGGTCCCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52081.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis