Browse Element(s) Details


Os.52114.1.S1_at

Description gb:AK105523.1
DB_XREF= gi:32990732
TID=Os.52114.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52114 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-127-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-127-F12, full insert sequence.
FL= gb:AK064747.1 gb:AK105523.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0919011/11Serine carboxypeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g09140OsAffx.12797.1.S1_s_at10/113+4742874..4745483Ras-related protein Rab-6A, putative, expressed
LOC_Os03g09150Os.54842.1.S1_at11/113+4747685..4752191Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os03g09160OsAffx.12798.1.S1_at11/113+4754682..4755497expressed protein
LOC_Os03g09170OsAffx.12799.1.S1_s_at11/113+4759361..4760672AP2 domain containing protein, expressed
LOC_Os03g09180Os.52339.1.S1_at9/113+4765343..4768436PHP domain C-terminal region family protein, expressed
LOC_Os03g09190Os.52114.1.S1_at11/113+4768742..4772248Serine carboxypeptidase family protein, expressed
LOC_Os03g09200OsAffx.25025.1.S1_at11/113+4771980..4777732expressed protein
LOC_Os03g09210Os.22368.1.S1_at11/113+4787046..4789938GRIM-19 protein, expressed
LOC_Os03g09210OsAffx.25026.1.S1_at10/113+4787046..4789938GRIM-19 protein, expressed
LOC_Os03g09220Os.7974.2.S1_at11/113+4794581..4799510Protein phosphatase 2C containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004185molecular_functionserine carboxypeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52114.1.S1_at--336--5991Chr03:4771596..4771620 (25 bp)
GAGACTCGATCGCAACTGTGTTTAT
LOC_Os03g09190
Os.52114.1.S1_at--579--5791Chr03:4771632..4771656 (25 bp)
GACGCATATTTCAGTCAATCCGTGA
LOC_Os03g09190
Os.52114.1.S1_at--264--6811Chr03:4771701..4771725 (25 bp)
GTTTTCTAGCCATATGCCCATACGA
LOC_Os03g09190
Os.52114.1.S1_at--714--5871Chr03:4771724..4771748 (25 bp)
GAGCGCTGGGCGATACACAATCAGG
LOC_Os03g09190
Os.52114.1.S1_at--685--8231Chr03:4771747..4771771 (25 bp)
GGCAAAAGCTAGGACGCGCCTGCAA
LOC_Os03g09190
Os.52114.1.S1_at--646--9011Chr03:4771767..4771791 (25 bp)
TGCAACACAGTCAGAGGCTCAGAGT
LOC_Os03g09190
Os.52114.1.S1_at--982--551Chr03:4771867..4771891 (25 bp)
ATCCTTTACGCAGTGGACCCAAGAG
LOC_Os03g09190
Os.52114.1.S1_at--11--3251Chr03:4771907..4771931 (25 bp)
CATACTACCATCTGTTACCAAGCAC
LOC_Os03g09190
Os.52114.1.S1_at--850--1491Chr03:4771927..4771951 (25 bp)
AGCACATCTGGCATCAGCATGCTGA
LOC_Os03g09190
Os.52114.1.S1_at--749--4751Chr03:4771947..4771971 (25 bp)
GCTGACCTCGTTCATCATATTTTCA
LOC_Os03g09190
Os.52114.1.S1_at--442--1191Chr03:4772082..4772106 (25 bp)
AGTAGTCTCCTTTAATTCCTCTTAG
LOC_Os03g09190
Target Sequence 
GAGACTCGATCGCAACTGTGTTTATGTGTGTAGGGTGACGCATATTTCAGTCAATCCGTGACAACCTCCAAACCTCGATC
TGTAGCCAACCCGTTTTTCCCACCGGTTTTCTAGCCATATGCCCATACGAGCGCTGGGCGATACACAATCAGGCAAAAGC
TAGGACGCGCCTGCAACACAGTCAGAGGCTCAGAGTCAGAGCTCATCAACTCAGGACGATGGAGCACGAATTTATGGAGC
GGATGCAATGCATCGGGGCCTATTCATTGCCATCCTTTACGCAGTGGACCCAAGAGCGTCACACACCGCCCCATACTACC
ATCTGTTACCAAGCACATCTGGCATCAGCATGCTGACCTCGTTCATCATATTTTCACCGAGAAAGGAAACCAAACAAGCA
GAATCAATCCCCTACTCTACTCTCTGAACTGAGTGATGAATGACTTCAACATTCCAGATCTACCAGCAACATGTAGTAAT
ACAGTGAGTAGTCTCCTTTAATTCCTCTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52114.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis