Browse Element(s) Details


Os.52138.1.S1_at

Description gb:AK065113.1
DB_XREF= gi:32975131
TID=Os.52138.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52138 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001O04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001O04, full insert sequence.
FL= gb:AK065113.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g562344/11ribosomal protein S14p/S29e containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56160Os.24927.1.S1_at11/113+31947398..31949431lectin receptor kinase 7, putative, expressed
LOC_Os03g56170OsAffx.25732.1.S1_at7/113+31951030..31951416hypothetical protein
LOC_Os03g56180OsAffx.13504.1.S1_at11/113+31952157..31954191Protein kinase domain containing protein, expressed
LOC_Os03g56190Os.12802.1.S1_at11/113+31956589..31958474Cytochrome c oxidase subunit VIa family protein, expressed
LOC_Os03g56200Os.29068.1.S1_at11/113+31958515..31960126expressed protein
LOC_Os03g56220Os.26469.1.S1_at11/113+31967085..31968819expressed protein
LOC_Os03g56234Os.14589.1.S1_at10/113+31974263..31982288ribosomal protein S14p/S29e containing protein, expressed
LOC_Os03g56234Os.52138.1.S1_at4/113+31974263..31982288ribosomal protein S14p/S29e containing protein, expressed
LOC_Os03g56250Os.21066.1.S1_at10/113+31982905..31987314wound and phytochrome signaling involved receptor like kinase, putative, expressed
LOC_Os03g56260Os.25316.1.S1_at11/113+32003192..32010045Kinesin motor domain containing protein, expressed
LOC_Os03g56260Os.25316.2.S1_x_at10/113+32003192..32010045Kinesin motor domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52138.1.S1_at--702--8011Chr03:31974592..31974616 (25 bp)
GGAGGCACTTTGTGCCAATTCTCCA
LOC_Os03g56234
Os.52138.1.S1_at--440--6491Chr03:31974389..31974413 (25 bp)
GATACCATCCGTGAGATACCAAGCT
LOC_Os03g56234
Os.52138.1.S1_at--384--9991Chr03:31974373..31974397 (25 bp)
TACCAAGCTGAGGACTTACTCTTAG
LOC_Os03g56234
Os.52138.1.S1_at--1004--6812Chr04:11461751..11462185 (25 bp)
GTTTCGAAACCTGTCATTCTTCATG
NONE
Os.52138.1.S1_at--909--1431Chr03:31974240..31974264 (25 bp)
AGAACTGTGAATTCTGGGCGCCGTT
NONE
Os.52138.1.S1_at--623--9511Chr03:31974209..31974233 (25 bp)
TCTCGTCGCTTGCTATATTGGCTAG
NONE
Os.52138.1.S1_at--161--7011Chr03:31974180..31974204 (25 bp)
GTACTACCAAGGATGCATCTCGCTG
NONE
Os.52138.1.S1_at--352--7691Chr03:31974148..31974172 (25 bp)
GGGTTTGCATTGTCCAAGTGAAGCT
NONE
Os.52138.1.S1_at--312--2791Chr03:31974077..31974101 (25 bp)
AAGAGGGACGCATTCTGCTGTGTAA
NONE
Os.52138.1.S1_at--851--2411Chr03:31973987..31974011 (25 bp)
AAAAAGCTCACACAATCTCTTGGTT
NONE
Os.52138.1.S1_at--171--7051Chr03:31973959..31973983 (25 bp)
GTAAAGCTTCTGATGACTGCCGTGT
NONE
Target Sequence 
GGAGGCACTTTGTGCCAATTCTCCACCTCGAAGTAAAAGTGATTCTGGGTTAAAGGATCAATCTCTAGCTGACTTATATT
GGGCTGATTCACTTGGACCACTGGACTTAGAGATACCATCCGTGAGATACCAAGCTGAGGACTTACTCTTAGGAGACAGT
CAGAATAGTTGGAATCGCATGATGGTGAATAGCCTGGATGCGTTTCGAAACCTGTCATTCTTCATGGCAGATAAGAATGA
CTCAATCCCATCCATCATGTAGAACTGTGAATTCTGGGCGCCGTTCATTGCTCTCGTCGCTTGCTATATTGGCTAGTGAA
GTACTACCAAGGATGCATCTCGCTGTAGAGGAGGGTTTGCATTGTCCAAGTGAAGCTGTTTGTGGGAAATCCAACAGCTG
CGGACTTGCTGTTCTTTGCAGTCAAGAGGGACGCATTCTGCTGTGTAAGATATATAGTAAGAGCTGTACTAAGATGTTAC
ATGTATGTCGTGTAAATTGTGGTGTCCCTGTACAAAAAGCTCACACAATCTCTTGGTTACAGTAAAGCTTCTGATGACTG
CCGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52138.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis