Browse Element(s) Details


Os.52157.1.S1_x_at

Description gb:AK100677.1
DB_XREF= gi:32985886
TID=Os.52157.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52157 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023113D18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023113D18, full insert sequence.
FL= gb:AK100677.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3446011/11Adagio 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34400Os.47130.4.A1_x_at1/1111+19655918..19656244retrotransposon protein, putative, unclassified
LOC_Os11g34410NANA11+19657235..19662874retrotransposon protein, putative, unclassified
LOC_Os11g34420Os.28943.1.S1_x_at2/1111+19663496..19666719retrotransposon protein, putative, unclassified
LOC_Os11g34430Os.47130.4.A1_x_at1/1111+19667659..19667985retrotransposon protein, putative, unclassified
LOC_Os11g34440OsAffx.31296.1.S1_at11/1111+19673520..19675027phospholipase A2, putative, expressed
LOC_Os11g34450Os.9221.1.S1_at8/1111+19677133..1968031114-3-3, putative, expressed
LOC_Os11g34460Os.52157.1.S1_x_at11/1111+19681205..19686055Adagio 3, putative, expressed
LOC_Os11g34470OsAffx.19155.1.S1_at11/1111+19690561..19693525hypothetical protein
LOC_Os11g34480NANA11+19701316..19701840transposon protein, putative, unclassified
LOC_Os11g34490OsAffx.22848.3.S1_x_at1/1111+19702520..19706227retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g34490OsAffx.22848.4.S1_x_at1/1111+19702520..19706227retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g34500NANA11+19707664..19713629retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007623biological_processcircadian rhythm
GO:0009908biological_processflower development
GO:0009911biological_processpositive regulation of flower development
GO:0042752biological_processregulation of circadian rhythm
GO:0043153biological_processentrainment of circadian clock by photoperiod
GO:0005634cellular_componentnucleus
GO:0005829cellular_componentcytosol
GO:0015030cellular_componentCajal body
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52157.1.S1_x_at--954--8851Chr11:19681775..19681799 (25 bp)
TGATGCCTACACTATGGACGCTGGT
LOC_Os11g34460
Os.52157.1.S1_x_at--275--6191Chr11:19681733..19681757 (25 bp)
GAGGCAACTGGCGACAACCGGGTTC
LOC_Os11g34460
Os.52157.1.S1_x_at--617--6211Chr11:19681688..19681712 (25 bp)
GAGGCTCGATCATGTCGCGGTCAGC
LOC_Os11g34460
Os.52157.1.S1_x_at--1120--1671Chr11:19681666..19681690 (25 bp)
AGCCTCCCCTGTGGACGGATAATCA
LOC_Os11g34460
Os.52157.1.S1_x_at--60--9751Chr11:19681647..19681671 (25 bp)
TAATCATATTCGGTGGCTCCATCGC
LOC_Os11g34460
Os.52157.1.S1_x_at--320--8011Chr11:19681563..19681587 (25 bp)
GGAGGATTTTGAACGTCCCTGGCCA
LOC_Os11g34460
Os.52157.1.S1_x_at--468--291Chr11:19681515..19681539 (25 bp)
ATAGCACATGCGTGGTTGGCGGCAC
LOC_Os11g34460
Os.52157.1.S1_x_at--973--7671Chr11:19681488..19681512 (25 bp)
GGGTTCTTGTCCTGGGTGGCCACAC
LOC_Os11g34460
Os.52157.1.S1_x_at--632--7931Chr11:19681452..19681476 (25 bp)
GGATTCTCAATGAGCTCCATGAGCT
LOC_Os11g34460
Os.52157.1.S1_x_at--125--691Chr11:19681401..19681425 (25 bp)
ATGAGTGATTCCCAACTCCATTGCT
LOC_Os11g34460
Os.52157.1.S1_x_at--302--6551Chr11:19681286..19681310 (25 bp)
GATTACTGGTAGTTTTCATCCTTAG
LOC_Os11g34460
Target Sequence 
TGATGCCTACACTATGGACGCTGGTGAAGACAGCCCACAATGGAGGCAACTGGCGACAACCGGGTTCCCGAGCATCGGTC
CACCTCCGAGGCTCGATCATGTCGCGGTCAGCCTCCCCTGTGGACGGATAATCATATTCGGTGGCTCCATCGCTGGGCTG
CACTCGCCCTCACAGCTGTTCCTCCTCGACCCAGCGGAGGAGAAGCCGACATGGAGGATTTTGAACGTCCCTGGCCAGCC
ACCCAAGTTCGCCTGGGGTCATAGCACATGCGTGGTTGGCGGCACCAGGGTTCTTGTCCTGGGTGGCCACACTGGGGAGG
AGTGGATTCTCAATGAGCTCCATGAGCTGTGCCTCGCGAGCAGGCCCGACGAAGATGAGTGATTCCCAACTCCATTGCTT
GTTCTTATTTATTTAGATCCTATGATTATTACTGATATCTGTTGTTGTCACAACCCTATGTAATAGTAGTAAAAAAGAAA
CAAAAAGAGGATTACTGGTAGTTTTCATCCTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52157.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis