Browse Element(s) Details


Os.9221.1.S1_at

Description gb:U65958.1
DB_XREF= gi:1519252
TID=Os.9221.1
CNT=37
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9221 (NCBI UniGene Cluster)
DEF=Oryza sativa GF14-d protein mRNA, complete cds.
PROD=GF14-d protein
FL= gb:U65958.1 gb:AK101580.1 gb:AK070548.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g344508/1114-3-3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34390OsAffx.31295.1.S1_at11/1111+19651224..19652722Glycosyltransferase 6, putative, expressed
LOC_Os11g34400Os.47130.4.A1_x_at1/1111+19655918..19656244retrotransposon protein, putative, unclassified
LOC_Os11g34410NANA11+19657235..19662874retrotransposon protein, putative, unclassified
LOC_Os11g34420Os.28943.1.S1_x_at2/1111+19663496..19666719retrotransposon protein, putative, unclassified
LOC_Os11g34430Os.47130.4.A1_x_at1/1111+19667659..19667985retrotransposon protein, putative, unclassified
LOC_Os11g34440OsAffx.31296.1.S1_at11/1111+19673520..19675027phospholipase A2, putative, expressed
LOC_Os11g34450Os.9221.1.S1_at8/1111+19677133..1968031114-3-3, putative, expressed
LOC_Os11g34460Os.52157.1.S1_x_at11/1111+19681205..19686055Adagio 3, putative, expressed
LOC_Os11g34470OsAffx.19155.1.S1_at11/1111+19690561..19693525hypothetical protein
LOC_Os11g34480NANA11+19701316..19701840transposon protein, putative, unclassified
LOC_Os11g34490OsAffx.22848.3.S1_x_at1/1111+19702520..19706227retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g34490OsAffx.22848.4.S1_x_at1/1111+19702520..19706227retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005635cellular_componentnuclear envelope
GO:0005737cellular_componentcytoplasm
GO:0005886cellular_componentplasma membrane
GO:0009570cellular_componentchloroplast stroma
GO:0005515molecular_functionprotein binding
GO:0045309molecular_functionprotein phosphorylated amino acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9221.1.S1_at--1079--6951Chr11:19678229..19678253 (25 bp)
GTACCTTGCGGAGTTTAAGTCTGGC
LOC_Os11g34450
Os.9221.1.S1_at--253--5011Chr11:19678265..19678289 (25 bp)
GCAGGCTGCGGAGAGCACCATGAAT
LOC_Os11g34450
Os.9221.1.S1_at--1056--2911Chr11:19678451..19678475 (25 bp)
AAGGCTTGGGCTTGCACTCAACTTT
LOC_Os11g34450
Os.9221.1.S1_at--45--3691Chr11:19678487..19678511 (25 bp)
CTATGAGATCTTGAACTCCCCTGAC
LOC_Os11g34450
Os.9221.1.S1_at--857--5611Chr11:19679530..19679554 (25 bp)
GACAGCCTTGGTGAAGAATCCTACA
LOC_Os11g34450
Os.9221.1.S1_at--837--4651Chr11:19679583..19679607 (25 bp)
GCGTGACAACTTGACTCTGTGGACT
LOC_Os11g34450
Os.9221.1.S1_at--586--5211Chr11:19679765..19679789 (25 bp)
GAATTCGGACGCCAGTCTGATGCAC
LOC_Os11g34450
Os.9221.1.S1_at--543--6271Chr11:19679819..19679843 (25 bp)
GATGTCTTCGGCTTTCAGTAGCTAT
LOC_Os11g34450
Os.9221.1.S1_at--138--6971NONE
GTAGCTATCTTTCTAGTACACGAAC
NONE
Os.9221.1.S1_at--289--3651NONE
CTTAAGTTAGTTCTGGGTTCACGCT
NONE
Os.9221.1.S1_at--647--8631NONE
TGGGTTCACGCTTTTGTTCAGTTGA
NONE
Target Sequence 
GTACCTTGCGGAGTTTAAGTCTGGCGACGAGAGGAAGCAGGCTGCGGAGAGCACCATGAATGCATACAAGGCTGCTCAGG
ACATTGCTCTCGCAGATTTGGCTCCGACCCACCCCATAAGGCTTGGGCTTGCACTCAACTTTTCAGTGTTCTACTATGAG
ATCTTGAACTCCCCTGACCGTGCCTGCAACCTNGCGAAGCAGGCGTTTGATGAGGCCATATCAGAACTGGACAGCCTTGG
TGAAGAATCCTACAAGGACAGCACTTTGATCATGCAGCTCCTGCGTGACAACTTGACTCTGTGGACTTCAGATGCCAATG
ATGATGGTGGTGANGAAATCAAGGAAGCCGCAGCTCCAAAAGAGCCTGGGGATCAGTGAGATGAATTCGGACGCCAGTCT
GATGCACCATCTGTTGTTGTTGGGGCAATGGACATTGATGTCTTCGGCTTTCAGTAGCTATCTTTCTAGTACACGAACTG
TCGTCGCACCATCGCGGAGGAGAAACGATGATGTTCTTAAATTACTTAAGTTAGTTCTGGGTTCACGCTTTTGTTCAGTT
GA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9221.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis